CX291634

Overview
NameCX291634
Unique NameCX291634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 86/129 (66.67%), Postives = 101/129 (78.29%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            +VN+QY+ NVLLKINAKLGGLNSLL IE S ++PLVSKVPTII GMDVSHGSPG             R WP++S+YRASVRSQS KLEMID LFKP   ++D G++RELLVDFY S+G+ KP Q+IIFR
Sbjct:  593 RVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFR 721          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+N+QY  NVLLKINAKLGG+NS L++E    +P+V++ PT+I GMDVSHGSPG             R WP++SRYRASVR+QS K+EMIDSLFKPL +  D GI+RELL+DFYK+S Q KP QIIIFR
Sbjct:  572 KMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVNQTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFR 700          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.575e-39
Identity = 78/129 (60.47%), Postives = 97/129 (75.19%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            +VN+QYL+N+LLKINAKLGG+NSLL IE S ++PLVSK PTII GMDVSHG PG             R WP++S+YRASV +QS KLEM+ SLFKP   +DD G++RE L+DFY SSG+ KP  +I+FR
Sbjct:  601 RVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDD-GLIRESLIDFYTSSGKRKPDHVIVFR 728          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.983e-32
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSS 353
            K+N+QYL NVLLKINAKLGGLNSLL IE+++ +PL+SK PTII GMDVSHGSPG               WP++S+Y+ASV +QS +LEMIDSLFK + N+D   I+RE L+DFY SS
Sbjct:  582 KINDQYLTNVLLKINAKLGGLNSLLQIERNQAIPLLSKTPTIILGMDVSHGSPGRDDVPSVAAVVSSLEWPLISKYKASVCTQSPRLEMIDSLFKLVGNEDHV-IIRESLMDFYNSS 697          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+++QYL NV LKIN K+GG N++L    ++ +PLVS  PTIIFG DV+H  PG             ++WP +++Y   V +Q+ + E+I  LFK    P       G++RELL+ F +++GQ KP +II +R
Sbjct:  747 KMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQ-KPQRIIFYR 878          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+N+Q L N+ LKIN K+GG N++L    S+ +PLV+  PTIIFG DV+H  PG             ++WP +++Y   V +QS + E+ID L+     P       G+VRELL+ F +S+GQ KP +II +R
Sbjct:  707 KMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQ-KPQRIIFYR 838          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+++QYL NV LKIN K+GG N++L    ++ +PLVS  PTIIFG DV+H  PG             ++WP +++Y   V +Q+ + E+I  LFK    P       G+++ELL+ F +++GQ KP +II +R
Sbjct:  784 KMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQ-KPQRIIFYR 915          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+++QYL NV LKIN K+GG N++L    S  +PLVS +PTIIFG DV+H   G             ++WP +++Y   V +Q+ + E+I  L+K    P+      G++R+LL+ F K++GQ KP +II +R
Sbjct:  663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYR 794          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+N+Q L N+ LKIN K+GG N++L    S+ +PLV+  PTIIFG DV+H  PG             ++WP +++Y   V +Q+ + E+I+ L+K    P       G++RELL+ F +S+G+ KP +II +R
Sbjct:  676 KMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLYKIWQDPQRGTVSGGMIRELLISFKRSTGE-KPQRIIFYR 807          
BLAST of CX291634 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    3 KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHXXXXXXXXXXXXRNWPILSRYRASVRSQSTKLEMIDSLFK----PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFR 389
            K+++QYL NV LKIN K+GG N++L    S  +PLVS +PTIIFG DV+H   G             ++WP +++Y   V +Q+ + E+I  L+K    P       G++RELL+ F K++GQ KP +II +R
Sbjct:  658 KISKQYLANVSLKINVKMGGRNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQ-KPLRIIFYR 789          
The following BLAST results are available for this feature:
BLAST of CX291634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AGO4A_ORYSJ1.093e-4266.67Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ1.929e-3962.02Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ9.575e-3960.47Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ2.983e-3260.68Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO1A_ORYSJ5.278e-2140.60Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO1D_ORYSJ2.006e-2041.35Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO1B_ORYSJ2.006e-2039.85Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH3.421e-2039.85Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1C_ORYSJ3.421e-2039.10Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ4.468e-2040.60Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC03011E07SK OF2 Citrus clementina cDNA clone C03011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291634 ID=CX291634; Name=CX291634; organism=Citrus clementina; type=EST; length=702bp
CTAAGGTCAATGAACAATATCTTATGAATGTCCTTTTGAAGATAAATGCC
AAACTTGGTGGTTTGAATTCTTTGTTGGCTATTGAGCAGTCAAAAAATCT
CCCTTTGGTCTCAAAGGTTCCTACGATAATTTTTGGGATGGATGTGTCAC
ATGGCTCCCCTGGACACTCTAACGTGCCATCCGTAGCTGCGGTTGTTAGC
TCTAGAAATTGGCCAATACTTTCCCGTTACAGAGCTTCTGTACGCAGCCA
GTCAACAAAGCTTGAGATGATAGATTCCTTGTTTAAGCCACTTCCAAACA
AGGATGATGCTGGCATAGTCAGAGAGCTTTTGGTGGACTTCTATAAGAGT
TCGGGACAAACAAAGCCATCCCAGATAATCATATTCAGGTCTACTTTAAC
TTGGAGATAATTTTTTTTTCTTTTTATATTTTATGCCATTATTGCATTTG
GTACTTTTTTGTTTTCTAATATTCAAGAACGGTGCTACCATTTATCTTGG
ATTGGTTCGAAGATTTGGAAGGCCGGAAGTGTAGGCCTAATGTGAACCAG
CCATGGCAAACCTGTATATTCCCTTTTTCTTTTGTGATTTTGACCTAGAG
CAGTTTCAAGAAATAGCATGACACTTGGGATTAAAGATTGTGGTATCTGG
TTTACTTGTACTGGAACCGGAAACATCCCTCTTTCATCAGGAATTTGGAT
GA
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