CX291640

Overview
NameCX291640
Unique NameCX291640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14387 contig Ccv1_Contig14387:136..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291640 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  417 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 644
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of CX291640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH1.340e-1242.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC03011F01SK OF2 Citrus clementina cDNA clone C03011F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291640 ID=CX291640; Name=CX291640; organism=Citrus clementina; type=EST; length=755bp
GAGGGTTTCTTGCAGGTTGGAATTGCTATCTTCTTTTGGCTCTTTTTCAG
GATTCTGCAGTCATCATTTTTCCTTTTTAAAAATTTTCGCTTCTCAGATA
TCAAGGAAGCAGTCACAAGATTTTGCTTGATTTCTGATTCAGTATCTCAA
ATTTAGTACAAAATTGGGTATCTGTAAATTTAAAATTTTAATTCGAAAAC
ATGGGCCTCGCTAGTATGCCGTCCGCATCAGAAGGAATGCTATGCTTGAT
TCTAATGAACACTGCTATGTCAATCTCAATCGTCAAAGGCATATTCAGAT
CAATCCTCAAGGTTGTCGGTTTCCAGCTTGCTGACTCATCATCGCCACCG
TATTCATATTTCGCATCACCTCAAGTTGTCTCCGCAGAGCCATATGATGT
AAATTTAAGTCCTCCCCTTAGCTATGTTGAGGAGTTCCGAAACCAGAACC
CTGCAATCAAGTATGAAACATTGCTCCATTGTGAAGATGCAGAGCATGAC
TGTTCTGTGTGTTTGACCGAGTTTGAGCCTCAATCTGATATCAATAACTT
GTCTTGTGGACATTTGTTTCATAAAGTGTGCTTGGAGAAGTGGCTGGACT
ATTTGAATGTTACGTGCCCGCTTTGCAGGACACCTCTAATTCCTGAGTTT
GAAGACGATCCCTCTTGCTTCTGGTGAGAGTGTTTTATGAGCTTGTCTAG
TTGAAGAGACTTCTATGTACAGCATGTAGTGTACAGGTATTTACTAATGC
ATCGG
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