CX291642

Overview
NameCX291642
Unique NameCX291642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13027 contig Ccv1_Contig13027:245..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.473e-55
Identity = 124/238 (52.10%), Postives = 150/238 (63.03%), Query Frame = 3
Query:    3 YLEAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDM 713
            YL AKLIS++L+FK++NLS+TR N+   +E +           N R  E  +G   +T+S+IAEQGS+R +E                   STELDE                      N++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYID+VT+LYP W  G S +  R  E A       PMGPVFSS  YEEES N+LK+DAIHAFAREG++
Sbjct:   19 YLLAKLISILLAFKDENLSLTR-NHTTQSEYE-----------NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAA------GPMGPVFSSLVYEEESDNELKIDAIHAFAREGEV 231          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.899e-54
Identity = 123/238 (51.68%), Postives = 149/238 (62.61%), Query Frame = 3
Query:    3 YLEAKLISVVLSFKEDNLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDE-MXXXXXXXXXXXXXXXXXXXXNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDM 713
            YL AKLIS+V++FKEDNLS+TR    +  E K    D      + R   +  G   + +S++AEQGS R++                    STELDE                      +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS +S+  MGPVFSS  Y+EES N+LK+DAIH FAREG++
Sbjct:   19 YLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD------SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEESENELKIDAIHGFAREGEV 246          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  357 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAA 596
            N+V+L+LYALYK ATEGPC+ P+P  L    +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  + KRG ++ A
Sbjct:   57 NEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPS--QGKRGADEKA 134          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  357 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLK 569
            N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A Q Y+D+V+ L P+  + S ++
Sbjct:   59 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVE 129          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  357 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK 611
            N+V+L+LYALYK ATEGPC+ P+P       +AKW AW  LG++P E A Q Y+D+V+ L  +  A S  K   G  D  + +SK
Sbjct:   57 NEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASSQGK---GGADGKAQESK 138          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  360 DVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYP 542
            + +++L+ L+KIATEG C   QP A+ ++ARAKW AWQKLG M  EEAM++Y+ +V++  P
Sbjct:  254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIP 314          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  357 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSS 563
            +D  L LYALY+ AT GPC+ P+PSA +   ++KW++WQ LG MP  EAM+ ++ I+ E  P W + +S
Sbjct:   41 DDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEDDPGWYSRAS 109          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  357 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTW 548
            ND  L LY L++ AT GPCS P+PSA     ++KW++WQ LG MP  EAM+ ++ I+ E  P W
Sbjct:   42 NDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEADPGW 105          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  369 LQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMGYL 722
            L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P W     +  K+G+E  A+T      GPV SS  +EE    + K   I  + RE ++ ++
Sbjct:   66 LYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW--NPQIPEKKGKE--ANTGFG---GPVISSLYHEETIREEDK--NIFDYCRENNIDHI 174          
BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBD6_BOVIN (Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  369 LQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEE 653
            L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P+W   S    K+G+E  A+T      GPV SS  +EE
Sbjct:   66 LYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPSWNPQS--PEKKGKE--ANTGFG---GPVVSSLYHEE 153          
The following BLAST results are available for this feature:
BLAST of CX291642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ACBP1_ARATH4.473e-5552.10Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
ACBP2_ARATH2.899e-5451.68Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
PECI_MOUSE3.465e-1548.75Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_HUMAN5.910e-1547.89Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_RAT1.317e-1445.88Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBP3_ARATH2.745e-1250.82Acyl-CoA-binding domain-containing protein 3 OS=Ar... [more]
ACBP4_ARATH7.988e-1246.38Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH1.780e-1148.44Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
ACBD6_HUMAN1.780e-1136.44Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]
ACBD6_BOVIN3.035e-1142.11Acyl-CoA-binding domain-containing protein 6 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC03011F03SK OF2 Citrus clementina cDNA clone C03011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291642 ID=CX291642; Name=CX291642; organism=Citrus clementina; type=EST; length=722bp
CTTATCTTGAGGCTAAGTTAATCTCTGTCGTCCTTTCTTTCAAAGAAGAT
AATCTCTCTATCACTCGCAGTAACAATAACAACTACAATGAACCAAAGCG
GACTAAAGACGACGTAGTCGTCGCCGCCCCGAATCCGCGCGGCCCGGAGG
CGGATTCGGGTCGGCCTCACGATACGGAGTCGATGATCGCGGAGCAAGGA
AGCGTGAGGAACGAAGAGAGCTTGCCTTGCAGTGATGTTGACAGCGATGG
TGACGATGATTGGGAGGGTGTCGAGTCTACGGAACTGGATGAGATGTTCA
GTGCGGCCACGGCATTTGTGGCGGCCAGTGCTGCTGCCTCGTCGAAGAAG
GTGTCCAATGATGTGCAGTTGCAGCTCTATGCGTTGTACAAGATTGCCAC
TGAAGGTCCCTGTAGTGCTCCCCAGCCTTCTGCGTTGAAAATGACCGCTC
GGGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCCATGCCTCCAGAAGAA
GCAATGCAGAAATACATTGATATTGTTACAGAGCTGTATCCTACTTGGGC
TGCTGGTTCATCTTTGAAGAGCAAACGTGGACAAGAAGATGCGGCAAGCA
CAGATTCCAAAGCACCAATGGGTCCTGTTTTCAGCTCTTTTGCGTATGAG
GAGGAATCTGGAAATGATTTGAAAATGGATGCTATCCATGCCTTTGCTAG
AGAAGGAGACATGGGATATCTG
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