CX291644
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_HUMAN (Ring finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26 Identity = 61/193 (31.61%), Postives = 107/193 (55.44%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 F+ ++I+ + D +++ ++ LKC ++ K + +G+ +R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AGD+CAICQ + P++L C+H+FCE+C+ W +RERTCPLCR+ V LR + DG+TS FQ++ Sbjct: 256 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHFQVY 444
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_HUMAN (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26 Identity = 64/196 (32.65%), Postives = 106/196 (54.08%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 FW +I+ + D +++ M LKC +L+ S ++ +G YR +P PVW+R+ ++ E+G++ L+ LYL KL +++F L+ + YG A+ Q + D+C+ICQ + PILL C+HIFCE+C++ WF RE+TCPLCR ++ + + + DG+TS QI+ Sbjct: 244 FWEVFWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQP-SYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVI-SDHINKWKDGATSSHLQIY 435
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_XENLA (RING finger and transmembrane domain-containing protein 1 OS=Xenopus laevis GN=rnft1 PE=2 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26 Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 F+ A++++ + D + + M LKC +L+ S +++ +G Y L+ TPVW+R+ + +YG+L F L+ LYL K+ + + ++ L+ L + +YG AT Q + A +CAICQ + PI L C+H+FCE+C+S WF +E+TCPLCR L+ + + DG+TSL +IF Sbjct: 225 FFDALWVVGITDFIGKFFFMGLKCIILLV--PSFVMSHKSKGYWYMALEELAQCYCTLVSTPVWFRYLI--DYGNLDSGAEWHFGILLALLYLILKILIIFGQRKTSSDCLR-LFLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLI-SNHSHKWKDGATSLQLRIF 416
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_MOUSE (RING finger and transmembrane domain-containing protein 1 OS=Mus musculus GN=Rnft1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25 Identity = 61/196 (31.12%), Postives = 104/196 (53.06%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 FW ++I+ + D +++ M LKC +L+ S ++ +G YR +P PVW+R+ ++ E+G++ L+ LYL KL +++F L+ + YG A+ Q + +C ICQ + P+LL C+HIFCE+C++ WF RE+TCPLCR ++ + + DG+TS Q++ Sbjct: 204 FWEVLWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEELCQYYRIFVPIPVWFRYLISYGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRP-SYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC-INKWKDGATSSHLQMY 395
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_DANRE (RING finger and transmembrane domain-containing protein 1 OS=Danio rerio GN=rnft1 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25 Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKE-----YGSLFSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 FW ++ + V + +++ M KC +L+ YR++GQ Y+ + P P+W+R+ ++ + G L+ LYL KL ++ S L+ EV+ GA A+ Q+ AGD+C ICQ P +L C+HIFCE+C+++W +ERTCPLCR ++ + + DG+TS QI+ Sbjct: 228 FWEVLWSVGVTNFILKFIFMGFKCLILLV--PCPLMTYRRRGQWYMLIEEVGQLYQVIAPVPLWFRYLVSYDEMDTSVGLTLGILLALLYLIMKLLALYGLSGSLQKTLRTFFSPEVN-GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVI-TDKVHKWKDGATSAHLQIY 419
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_PONAB (Ring finger and transmembrane domain-containing protein 2 OS=Pongo abelii GN=RNFT2 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25 Identity = 60/193 (31.09%), Postives = 106/193 (54.92%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 F+ ++I+ + D +++ ++ LKC ++ K + +G+ +R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AGD+CAICQ + P++L C+H+FCE+C+ W +RERTCPL R+ V LR + DG+TS FQ++ Sbjct: 256 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLSRS-VAVDTLRCWKDGATSAHFQVY 444
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_XENTR (RING finger and transmembrane domain-containing protein 1 OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25 Identity = 65/198 (32.83%), Postives = 111/198 (56.06%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 F+ A++++ + D + + M LKC +L+ S +++ +G Y L+ TPVW+R+ + +YG+ F L+ LYL KL + + ++ ++L+ L + +YGA AT Q + +CAICQ + PI+L C+H+FCE+C+S WF +E+TCPLCR ++ + + DG+TSL +IF Sbjct: 225 FFDALWVVGITDFIGKFFFMGLKCIILLV--PSFVMSHKSKGYWYMALEEVAQCYCMLVSTPVWFRYLI--DYGNQNSGAEWHFGILLALLYLILKLLIIFGQRKTSSNSLR-LFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLCRTVI-SNQSHKWKDGATSLQLRIF 416
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_MOUSE (Ring finger and transmembrane domain-containing protein 2 OS=Mus musculus GN=Rnft2 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24 Identity = 59/193 (30.57%), Postives = 105/193 (54.40%), Query Frame = 2 Query: 56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628 F+ ++I+ + D +++ ++ LKC ++ K + +G+ +R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AG +CAICQ + P++L C+H+FCE+C+ W +RERTCPLCR+ V LR + DG+TS Q++ Sbjct: 257 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHLQVY 445 The following BLAST results are available for this feature:
BLAST of CX291644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291644 ID=CX291644; Name=CX291644; organism=Citrus clementina; type=EST; length=652bpback to top |