CX291644

Overview
NameCX291644
Unique NameCX291644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2730 contig Ccv1_Contig2730:1193..1844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_HUMAN (Ring finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 61/193 (31.61%), Postives = 107/193 (55.44%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            F+  ++I+ + D +++  ++ LKC ++   K       + +G+           +R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AGD+CAICQ +   P++L C+H+FCE+C+  W +RERTCPLCR+ V    LR + DG+TS  FQ++
Sbjct:  256 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHFQVY 444          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_HUMAN (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 64/196 (32.65%), Postives = 106/196 (54.08%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            FW   +I+ + D +++   M LKC +L+    S    ++ +G            YR  +P PVW+R+ ++  E+G++       L+  LYL  KL      +++F   L+    +   YG  A+  Q +   D+C+ICQ +   PILL C+HIFCE+C++ WF RE+TCPLCR ++ +  +  + DG+TS   QI+
Sbjct:  244 FWEVFWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQP-SYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVI-SDHINKWKDGATSSHLQIY 435          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_XENLA (RING finger and transmembrane domain-containing protein 1 OS=Xenopus laevis GN=rnft1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26
Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            F+ A++++ + D + +   M LKC +L+    S   +++ +G            Y  L+ TPVW+R+ +  +YG+L       F  L+  LYL  K+  +  + ++    L+ L   + +YG  AT  Q + A  +CAICQ +   PI L C+H+FCE+C+S WF +E+TCPLCR L+ +     + DG+TSL  +IF
Sbjct:  225 FFDALWVVGITDFIGKFFFMGLKCIILLV--PSFVMSHKSKGYWYMALEELAQCYCTLVSTPVWFRYLI--DYGNLDSGAEWHFGILLALLYLILKILIIFGQRKTSSDCLR-LFLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLI-SNHSHKWKDGATSLQLRIF 416          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_MOUSE (RING finger and transmembrane domain-containing protein 1 OS=Mus musculus GN=Rnft1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 61/196 (31.12%), Postives = 104/196 (53.06%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            FW  ++I+ + D +++   M LKC +L+    S    ++ +G            YR  +P PVW+R+ ++  E+G++       L+  LYL  KL      +++F   L+    +   YG  A+  Q +    +C ICQ +   P+LL C+HIFCE+C++ WF RE+TCPLCR ++    +  + DG+TS   Q++
Sbjct:  204 FWEVLWIVGITDFILKFFFMGLKCLILLV--PSFIMPFKSKGYWYMLLEELCQYYRIFVPIPVWFRYLISYGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRP-SYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC-INKWKDGATSSHLQMY 395          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_DANRE (RING finger and transmembrane domain-containing protein 1 OS=Danio rerio GN=rnft1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKE-----YGSLFSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            FW  ++ + V + +++   M  KC +L+         YR++GQ           Y+ + P P+W+R+ ++ +      G     L+  LYL  KL ++     S    L+     EV+ GA A+  Q+  AGD+C ICQ     P +L C+HIFCE+C+++W  +ERTCPLCR ++    +  + DG+TS   QI+
Sbjct:  228 FWEVLWSVGVTNFILKFIFMGFKCLILLV--PCPLMTYRRRGQWYMLIEEVGQLYQVIAPVPLWFRYLVSYDEMDTSVGLTLGILLALLYLIMKLLALYGLSGSLQKTLRTFFSPEVN-GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVI-TDKVHKWKDGATSAHLQIY 419          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_PONAB (Ring finger and transmembrane domain-containing protein 2 OS=Pongo abelii GN=RNFT2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 60/193 (31.09%), Postives = 106/193 (54.92%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            F+  ++I+ + D +++  ++ LKC ++   K       + +G+           +R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AGD+CAICQ +   P++L C+H+FCE+C+  W +RERTCPL R+ V    LR + DG+TS  FQ++
Sbjct:  256 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLSRS-VAVDTLRCWKDGATSAHFQVY 444          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT1_XENTR (RING finger and transmembrane domain-containing protein 1 OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 65/198 (32.83%), Postives = 111/198 (56.06%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            F+ A++++ + D + +   M LKC +L+    S   +++ +G            Y  L+ TPVW+R+ +  +YG+        F  L+  LYL  KL  +  + ++  ++L+ L   + +YGA AT  Q +    +CAICQ +   PI+L C+H+FCE+C+S WF +E+TCPLCR ++ +     + DG+TSL  +IF
Sbjct:  225 FFDALWVVGITDFIGKFFFMGLKCIILLV--PSFVMSHKSKGYWYMALEEVAQCYCMLVSTPVWFRYLI--DYGNQNSGAEWHFGILLALLYLILKLLIIFGQRKTSSNSLR-LFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLCRTVI-SNQSHKWKDGATSLQLRIF 416          
BLAST of CX291644 vs. ExPASy Swiss-Prot
Match: RNFT2_MOUSE (Ring finger and transmembrane domain-containing protein 2 OS=Mus musculus GN=Rnft2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 59/193 (30.57%), Postives = 105/193 (54.40%), Query Frame = 2
Query:   56 FWHAIFIIMVNDTLVRQASMVLKCFLLMYYKNSRGRNYRKQGQXXXXXXXXXXXYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 628
            F+  ++I+ + D +++  ++ LKC ++   K       + +G+           +R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AG +CAICQ +   P++L C+H+FCE+C+  W +RERTCPLCR+ V    LR + DG+TS   Q++
Sbjct:  257 FFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHLQVY 445          
The following BLAST results are available for this feature:
BLAST of CX291644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RNFT2_HUMAN2.149e-2631.61Ring finger and transmembrane domain-containing pr... [more]
RNFT1_HUMAN2.149e-2632.65RING finger and transmembrane domain-containing pr... [more]
RNFT1_XENLA8.167e-2633.33RING finger and transmembrane domain-containing pr... [more]
RNFT1_MOUSE1.820e-2531.12RING finger and transmembrane domain-containing pr... [more]
RNFT1_DANRE1.820e-2531.63RING finger and transmembrane domain-containing pr... [more]
RNFT2_PONAB3.104e-2531.09Ring finger and transmembrane domain-containing pr... [more]
RNFT1_XENTR6.914e-2532.83RING finger and transmembrane domain-containing pr... [more]
RNFT2_MOUSE1.540e-2430.57Ring finger and transmembrane domain-containing pr... [more]
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Properties
Property NameValue
Genbank descriptionC03011F05SK OF2 Citrus clementina cDNA clone C03011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291644 ID=CX291644; Name=CX291644; organism=Citrus clementina; type=EST; length=652bp
GAATGATGATCTTTTGTACCCTTTGGTCCTGCTTCCTCCCAAATCCATAC
CACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTC
CGGCAGGCATCAATGGTGCTCAAGTGTTTTCTTTTAATGTATTACAAGAA
CAGCAGAGGCCGAAATTATCGGAAGCAGGGTCAGTTGCTAACTTTGGTTG
AGTATTTGATGCTTCTGTACCGTGCGTTATTGCCAACACCAGTATGGTAT
CGTTTCTTCTTGAACAAAGAATATGGGAGTCTCTTCTCATCGCTGATGAC
AGGGCTGTACTTAACTTTCAAGCTTACATCTGTGGTTGAGAAGGTGCAAT
CCTTCTTTTCTGCGTTGAAGGCATTGTCGCGTAAAGAGGTGCATTATGGG
GCCTATGCAACAACAGAGCAGGTGAATGCAGCTGGAGATTTGTGTGCTAT
ATGTCAGGAGAAGATGCATGCTCCAATTCTGCTTCGTTGTAAACACATTT
TCTGCGAAGACTGTGTCTCAGAGTGGTTTGAGAGGGAAAGGACGTGCCCA
TTGTGCAGAGCTTTGGTCAAGGCAGCAGATCTCAGATCATTTGGTGATGG
ATCAACTAGTTTGTTTTTCCAGATATTCTGATTGCACTACTGTAGAAACC
CG
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