CX291662

Overview
NameCX291662
Unique NameCX291662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PARUW (Tyrosyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.145e-50
Identity = 94/179 (52.51%), Postives = 131/179 (73.18%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFG----SSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            NV+D+L  RG ++++TS+ +R L +   + +KVYCGFDPTA+SLHLGNL+ I+ L+WF R GH  VA++GGAT  +GDPSGK+ ER  LD   ++ N+ GISK    I      ++  +ILNN DW+K+F+F+ FL+ VG+  R+  M+AK+SVK RL SE+G+SFTEF YQ+LQGYDF
Sbjct:    3 NVMDVLRERGFIDAVTSEEIRQLTN---QPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGHTPVAIVGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAILDFNHPTAPAIILNNLDWFKNFTFISFLRDVGKLFRLSPMLAKDSVKTRLNSEEGMSFTEFCYQILQGYDF 178          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_RHOBA (Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica GN=tyrS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.257e-42
Identity = 87/179 (48.60%), Postives = 122/179 (68.16%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIS---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            ++++ L  RGLL   T +N +  L +S  +T  +Y GFDPTA SLH+G ++ +++L  F R GH  +AL+GGAT  +GDPSGKS ER  L  D L+KN+ G++   + F    G +   +LNN+DW KD+S+L+FL+ VG+   +G M+ KESV+ RLESE GLS+TEFSY LLQ YDF
Sbjct:   15 SLIEDLRWRGLLNQTTDENGIAELLNSGPQT--IYIGFDPTATSLHVGGMMQLMMLRRFQRAGHNPIALVGGATGMIGDPSGKSEERNLLSADQLQKNVDGVAAQMRHFLDFEGDNAAKLLNNFDWMKDYSYLEFLRDVGKNFPVGAMMGKESVRSRLESEAGLSYTEFSYMLLQAYDF 191          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACFR (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.013e-40
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I K  +          +   ++NNYDW K+F+FLDF ++VG+   +  M+AKESVKKRL  E+  GLSFTEF+YQLLQGYDF
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKKQLAKFLDFESDAPNRAELVNNYDWMKEFTFLDFAREVGKHITVNYMMAKESVKKRLNGEARDGLSFTEFTYQLLQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACFN (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tyrS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.013e-40
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I K  +          +   ++NNYDW K+F+FLDF ++VG+   +  M+AKESVKKRL  E+  GLSFTEF+YQLLQGYDF
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKKQLAKFLDFESDAPNRAELVNNYDWMKEFTFLDFAREVGKHITVNYMMAKESVKKRLNGEARDGLSFTEFTYQLLQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACTN (Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=tyrS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.629e-40
Identity = 88/182 (48.35%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSNVV-----ILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG+L+ I       L   N++ +  Y G DPTA+SLH+G+L G+++L    RCGH+ +ALIGGAT  +GDPSGKS ER  L+ +TL  N   I K  +      + V     ++NNYDW K+FSFLDF+++VG+   +  M+AK+SVK+RL  E+  GLSFTEF+YQLLQGYDF
Sbjct:    2 NFVEELRWRGMLQDIMPGTEELL---NKEQVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGHKPLALIGGATGMIGDPSGKSAERNLLNEETLRHNQACIKKQLAKFLDFESDVPNRAELVNNYDWMKEFSFLDFVREVGKHITVNYMMAKDSVKRRLNGEARDGLSFTEFTYQLLQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_FLAPJ (Tyrosyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tyrS PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.648e-40
Identity = 86/181 (47.51%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTI--FGSSNV---VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N+V+ L+ RGL   +       L    +++   Y GFDPTA+SLH+G+++ II+L      GH+ +ALIGGAT  +GDPSGKS ER  LD  TL KN+ GI    S+   F ++N    +++NNYDW KDFSF+DF + +G+   +  M++K+SVKKRL +E +G+SFTEF+YQL+QGYDF
Sbjct:    3 NLVEELKWRGLFHDMMPGTEEQLT---KESTTAYIGFDPTADSLHIGSMVQIILLVHLKNFGHKPIALIGGATGMIGDPSGKSDERNLLDEATLNKNVAGIKAVLSSFLDFNTTNANAPILVNNYDWMKDFSFIDFARDIGKRITVNYMMSKDSVKKRLGAEGEGMSFTEFTYQLIQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_BACV8 (Tyrosyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tyrS PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.225e-39
Identity = 85/182 (46.70%), Postives = 119/182 (65.38%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++ ++       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +AL+GGAT  +GDPSGKS ER  L  +TL  N+  I K  +          +   ++NNYDW KDF+FLDF ++VG+   +  M+AK+SV+KRL  E+  GLSFTEF+YQLLQGYDF
Sbjct:    2 NFVEELTWRGMVHTMMPGTEELLA---KEQVTAYLGIDPTADSLHIGHLCGVMMLRHFQRCGHKPLALVGGATGMIGDPSGKSQERNLLTEETLRHNVACIKKQLAKFLDFESDAPNKAELVNNYDWMKDFTFLDFAREVGKHITVNYMMAKDSVQKRLNGEARDGLSFTEFTYQLLQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_FLAJ1 (Tyrosyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tyrS PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.796e-39
Identity = 86/185 (46.49%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLK----VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIFGSSN-----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDF 761
            N+V+ L+ RGL          S+  + E+ LK     Y GFDPTA+SLH+G+++ II+L      GHQ +AL+GGAT  +GDPSGKS ER  L+ +TL KN+ GI    S     ++      +++NNYDW K+FSF+DF ++VG+   +  M+AK+SVKKR+  E +G+SFTEF+YQL+QGYDF
Sbjct:    3 NLVEELKWRGLYHD-------SMPGTEEQLLKEVTSAYIGFDPTADSLHIGSMVQIILLVHLKNFGHQPIALVGGATGMIGDPSGKSDERNLLNEETLAKNVAGIKSVLSRFLDFNSKEQNAPIMVNNYDWMKEFSFIDFAREVGKRITVNYMMAKDSVKKRINGEGEGMSFTEFTYQLIQGYDF 180          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYYM_YEAST (Tyrosyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=MSY1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.104e-38
Identity = 86/223 (38.57%), Postives = 128/223 (57.40%), Query Frame = 3
Query:  150 IKNSAFFSSISCVHQLQSDPQTQTHGRHPNVVDILERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----------------GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDF 761
            +  S F+S  S +     + Q  +  R  N++D L++RGL+  ++     LR+  + N+K +K+YCG DPTA+SLHLGNL+ ++VL  F   GH  V +IGGAT +VGDPSG+  ER  ++ D  + N+  IS+     F                  S      NN++WWKD   LDFL   GR  R+ +M+A++S+  RL+++ GL F EF+YQ+LQ YDF
Sbjct:   31 LPKSRFYSQPSAL-----EVQGTSDSRSDNILDELKQRGLVSQVSQPESFLRTKLNGNDK-IKLYCGVDPTAQSLHLGNLVPLMVLLHFYVKGHDIVTVIGGATGKVGDPSGRKTERDVMENDIRQSNVASISQQLQRFFKNGLEYYRNRCALTEDVPSGKYTPRNNFNWWKDIKMLDFLADFGRHIRVQSMLARDSISSRLQTKNGLGFNEFTYQVLQAYDF 247          
BLAST of CX291662 vs. ExPASy Swiss-Prot
Match: SYY_PORGI (Tyrosyl-tRNA synthetase OS=Porphyromonas gingivalis GN=tyrS PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.060e-37
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  237 NVVDILERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGISKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDF 761
            N V+ L  RG++  I       L   N+     Y G DPTA+SLH+G+L+G+++L  F R GH+ +ALIGGAT  +GDPS KS ER  LD  TL  N   I +  +          +   ++NNYDW KD+SFL F++ +G+   +  M+AK+SVKKRL  ES  GLSFTEFSYQLLQGYD+
Sbjct:    2 NFVEELRWRGMIHDIMPGTEEHL---NKGMTSAYVGIDPTADSLHIGHLVGVMMLRHFQRAGHRPIALIGGATGMIGDPSMKSAERVLLDEATLRHNQDCIKQQLAKFLDFDSDAPNAAKLVNNYDWMKDYSFLGFIRDIGKHITVNYMMAKDSVKKRLSAESSTGLSFTEFSYQLLQGYDY 180          
The following BLAST results are available for this feature:
BLAST of CX291662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_PARUW2.145e-5052.51Tyrosyl-tRNA synthetase OS=Protochlamydia amoeboph... [more]
SYY_RHOBA6.257e-4248.60Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica ... [more]
SYY_BACFR2.013e-4048.35Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN... [more]
SYY_BACFN2.013e-4048.35Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (s... [more]
SYY_BACTN2.629e-4048.35Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaom... [more]
SYY_FLAPJ7.648e-4047.51Tyrosyl-tRNA synthetase OS=Flavobacterium psychrop... [more]
SYY_BACV82.225e-3946.70Tyrosyl-tRNA synthetase OS=Bacteroides vulgatus (s... [more]
SYY_FLAJ13.796e-3946.49Tyrosyl-tRNA synthetase OS=Flavobacterium johnsoni... [more]
SYYM_YEAST1.104e-3838.57Tyrosyl-tRNA synthetase, mitochondrial OS=Saccharo... [more]
SYY_PORGI6.060e-3746.70Tyrosyl-tRNA synthetase OS=Porphyromonas gingivali... [more]

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Properties
Property NameValue
Genbank descriptionC03011G11SK OF2 Citrus clementina cDNA clone C03011G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291662 ID=CX291662; Name=CX291662; organism=Citrus clementina; type=EST; length=762bp
AAGTGCTGCTGACCCAAACGCAAATGCCAGCCGCAGCCGCAGCCGCTGCC
GCTGCGTCGAGAACTCTCCTCTGCTTCCACCAAAAACTCATAATCTCATC
CATTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCAACGCA
TTAAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCACCAACTCCAA
TCCGACCCACAGACACAAACCCACGGCCGTCACCCCAATGTCGTCGACAT
TCTCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCT
CACTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGAC
CCAACTGCTGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCT
CTCTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCG
CCACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAA
CTCGACATTGATACGTTAGAAAAGAACATTCTTGGAATTAGTAAGACTTT
TTCAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATAATTATGATT
GGTGGAAAGATTTTAGCTTCCTGGATTTTCTTAAACAAGTGGGTCGATTT
GCGAGAATTGGGACTATGATTGCTAAGGAGAGTGTGAAGAAGAGGTTGGA
ATCTGAGCAAGGATTGAGCTTTACTGAGTTTAGTTATCAGTTGTTGCAGG
GATATGATTTTC
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