CX291706

Overview
NameCX291706
Unique NameCX291706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9995 contig Ccv1_Contig9995:75..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.252e-24
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Sbjct:   12 LLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct:   12 LLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 44/58 (75.86%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 44/58 (75.86%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 44/58 (75.86%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.751e-18
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 171
            LLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++
Sbjct:   12 LLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            LLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:   12 LLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CX291706 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.355e-17
Identity = 40/58 (68.97%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 LLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 174
            L+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   12 LVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
The following BLAST results are available for this feature:
BLAST of CX291706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL38_ARATH1.252e-2493.1060S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC1.530e-2287.9360S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_MOUSE2.068e-1977.5960S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_BRABE2.068e-1977.5960S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_RAT6.017e-1975.8660S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN6.017e-1975.8660S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN6.017e-1975.8660S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA1.751e-1875.4460S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_IXOSC4.312e-1774.5860S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]
RL38_LYSTE7.355e-1768.9760S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]

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Properties
Property NameValue
Genbank descriptionC04002E05SK FlavFr1 Citrus clementina cDNA clone C04002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291706 ID=CX291706; Name=CX291706; organism=Citrus clementina; type=EST; length=469bp
CTTCTTACTGCAAGAAGGAAGGATGCCCGTTCAGTCAAAATCAAGAGGAG
CAGGGATGTTGTTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACAC
TCTGTGTTTTTGACTCCGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCT
CCAGGTTTGAGCGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGT
GGGATCAGAAGTTGATGAAATTTGCTTCATACTTTCTACCTCGAAATTGT
TAGGCCTTACAAATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTT
TTTTTATTAGTTTTCTTGGGAATTTTCTCCAAATATTTCGTTTGCATGAG
TTTGAGTTGTATATCACCTTAGTGTTTTTTTATCGATCAAGTCGGAACAT
GTCTATTTATTTTGTGGCCTAATTATTATATTTCTTATTTATTAGTAATC
TAAAAAAAAAAAAAAAAAA
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