CX291707

Overview
NameCX291707
Unique NameCX291707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14416 contig Ccv1_Contig14416:197..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.700e-48
Identity = 83/124 (66.94%), Postives = 102/124 (82.26%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRE+AAGM+SA+ YA+ QVAVEI+Y T QT +Y LILYSMIG+ W + KFF F+Y+M   FV FTLYGMM+VALTP  Q+A I LSFFL+ WNLF+GF+IPR +IP+WWRW+YW SP AW
Sbjct: 1258 RTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAW 1381          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.822e-47
Identity = 80/124 (64.52%), Postives = 102/124 (82.26%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRE+AAGM+SA+ YA+ QVAVEI+Y T QT +Y LILYSMIG  W + KF  F+Y+M  SF+ FTLYGMM++ALTP  Q+A I +SFFL+LWNLF+GF+IPR +IP+WWRW+YW +P AW
Sbjct: 1259 RTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAW 1382          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.514e-47
Identity = 80/124 (64.52%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRERAAGM+S L YA  QVA+E IYV  QT +Y L+L+SMIG++W   KFF F+YF++  F  F++YGMM+VALTPG Q+A IV+SFFL+ WNLF+GF+IPR  IPVWWRW+YW SP AW
Sbjct: 1265 RTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAW 1388          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.151e-43
Identity = 73/124 (58.87%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRERAAGM+SA+ YA GQV++EI Y+  Q+V Y +I+Y+MIGF+W++GKFF + + M+ + + FT YGMM VA+TP Q VA+IV +FF  +WNLF+GF+IPR  +PVWWRW+YW +P AW
Sbjct: 1243 RTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAW 1366          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.834e-42
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRERAAGM+SA  YA GQVA+E  Y   Q+++Y +I+YSMIGFKW   KFF + +FM+ +F+ FT YGMM V LTP   VA+IV S F  +WNLF+GF+IPR ++P+WWRW+ W+ P AW
Sbjct: 1273 RTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAW 1396          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.834e-42
Identity = 72/124 (58.06%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRE+AAGM+SA+ YA  QV +EI Y+  Q  +Y LI+YSMIGF+W + KFF  F+FM+ +F+ FT +GMM VA+TP Q VA+IV  FF  +WNLF+GF++PR  IP+WWRW+YW  P AW
Sbjct: 1244 RTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAW 1367          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.314e-42
Identity = 71/124 (57.26%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRE+AAGM+SA+ YA  QV +EI YV  Q ++Y LI+Y+MIGF+W   KFF + +FM+ SF+ FT YGMM VA+TP   +A++V S F  +WNLF+GF+IPR  +PVWW W+YWL P AW
Sbjct: 1231 RTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAW 1354          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.092e-41
Identity = 69/124 (55.65%), Postives = 93/124 (75.00%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRE+AAGM+SAL YA  QV +E+ ++  QT++Y L++YSMIGF W   KF  + +FM+ +F+ FT YGMM VA+TP   +A IV + F A+WN+FAGF+IPR  IP+WWRW+YW  P AW
Sbjct: 1249 RTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAW 1372          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.981e-41
Identity = 68/124 (54.84%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRERAAGM+SA  YA GQVA+E+ Y+  QT++Y +++YSMIGF+W + KF  + +FM+ + + FT YGMM V LTP + +A I+ S F  +WNLF+G++IPR +IPVWWRW+ W+ P AW
Sbjct: 1258 RTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAW 1381          
BLAST of CX291707 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.981e-41
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 1
Query:   37 RTVYYRERAAGMFSALSYALGQVAVEIIYVTAQTVMYVLILYSMIGFKWELGKFFLFFYFMWASFVIFTLYGMMIVALTPGQQVATIVLSFFLALWNLFAGFMIPREEIPVWWRWHYWLSPEAW 408
            RTV+YRERAAGM+SAL YA GQVA+E  Y   Q+V+Y +I+YSMIGF+W + KFF + +FM+ + + FT YGMM V LTP   VA+IV S F A+WNLF GF+I R   PVWWRW+ W+ P AW
Sbjct: 1277 RTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAW 1400          
The following BLAST results are available for this feature:
BLAST of CX291707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AB34G_ARATH7.700e-4866.94ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH3.822e-4764.52ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR2_NICPL8.514e-4764.52Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_TOBAC1.151e-4358.87Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR2_ORYSJ2.834e-4258.06Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR1_NICPL4.834e-4258.06Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB40G_ARATH6.314e-4257.26ABC transporter G family member 40 OS=Arabidopsis ... [more]
TUR2_SPIPO4.092e-4155.65Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR4_ORYSJ6.981e-4154.84Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_ORYSJ6.981e-4158.87Probable pleiotropic drug resistance protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC04002E06SK FlavFr1 Citrus clementina cDNA clone C04002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291707 ID=CX291707; Name=CX291707; organism=Citrus clementina; type=EST; length=408bp
GAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGACGGTATACTA
CCGTGAAAGAGCAGCCGGGATGTTTTCTGCATTGTCTTATGCACTTGGTC
AAGTTGCAGTAGAGATAATATATGTGACAGCTCAAACTGTCATGTATGTT
CTTATCCTTTACTCGATGATAGGATTCAAGTGGGAGCTGGGAAAATTCTT
CTTGTTCTTCTACTTCATGTGGGCGTCTTTTGTCATTTTCACATTGTACG
GAATGATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTC
TTGTCCTTCTTCCTTGCACTATGGAACTTGTTCGCCGGTTTCATGATTCC
CAGAGAGGAAATTCCTGTCTGGTGGAGGTGGCACTACTGGCTTTCTCCGG
AGGCTTGG
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