CX291709

Overview
NameCX291709
Unique NameCX291709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14416 contig Ccv1_Contig14416:485..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A I +SFFL+LWNLF+GF+IPR +IP+WWRWYYW +PVAW LYGL+T QVGD  + V I     + +K  +K+   ++ DF+PVVAVVH+AWI +FLFVFAY IK +NFQRR
Sbjct: 1343 AGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A I LSFFL+ WNLF+GF+IPR +IP+WWRWYYW SPVAW LYG++T QVGD  + V I     M++K  +K+   +  DF+PVVAVVH+AWI +FLF FAY IK +NFQRR
Sbjct: 1342 AGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.014e-32
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGT-SMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A IV+SFFL+ WNLF+GF+IPR  IPVWWRWYYW SPVAW +YG+   QVGD   ++++   T  + V +F+K+   Y  DF+ VV   H+ W+ +F FVFAY IK +N+Q+R
Sbjct: 1349 AAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.960e-31
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A+IV +FF  +WNLF+GF+IPR  +PVWWRWYYW +PVAW LYGLV  Q GD++T++      + TV+QF++    +K DF+ VVA V  A++ +F F FA+AIK+ NFQRR
Sbjct: 1327 ASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKL----SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.199e-30
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A+IV  FF  +WNLF+GF++PR  IP+WWRWYYW  P+AW LYGLV  Q GD++  +   N    TV+QF++ N  +K DF+ VVA V +A+  VF F FA  IK+ NFQRR
Sbjct: 1328 ASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQN---QTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.643e-29
Identity = 54/113 (47.79%), Postives = 82/113 (72.57%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGT-SMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A+I  S F  ++NLF+GF IPR +IP WW WYYW+ PVAW +YGL+  Q GDV+T++Q+  G   +TVKQ+++D+  +++DF+  VA V +A+   F F+FA+ I+++NFQ R
Sbjct: 1357 ASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.063e-29
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIP-NGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A +++SF L+ WN FAGF+IPR  IPVWWRW+YW +PV+W +YG++  Q  D    V +P   T+M VK F++ N  +K DF+  V + H  ++ +F F+F Y IK +NFQ+R
Sbjct: 1342 AAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.063e-29
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGT-SMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A+I+ + F  LWNLF+GFMIP + IP+WWRWYYW +PVAW LYGL+  Q GD +  V++ +G   + VKQ ++D   YK DF+ V A++ +A+   F  VFA+AIK+ NFQRR
Sbjct: 1308 ASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A I+ S F  +WNLF+G++IPR +IPVWWRWY W+ PVAW LYGLV  Q GD++    +  G + TV QFV D   +  +F+ VVAVVH+ +   F F+F++AI   NFQRR
Sbjct: 1342 AAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQ---HVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.930e-28
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = -1
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGT-SMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A+I  S F  ++NLF+GF IPR +IP WW WYYW+ PVAW +YGL+T Q GDV+T + +  G   +TVKQ++KD   +++D++  VA V + +   F F+FA+ IK++NFQ R
Sbjct: 1330 ASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
The following BLAST results are available for this feature:
BLAST of CX291709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB39G_ARATH4.189e-3860.71ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH9.333e-3860.71ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR2_NICPL2.014e-3252.21Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_TOBAC4.960e-3153.57Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL4.199e-3052.68Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB36G_ARATH4.643e-2947.79ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR5_ORYSJ6.063e-2946.02Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB32G_ARATH6.063e-2951.33ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR4_ORYSJ1.764e-2850.89Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
AB35G_ARATH3.930e-2847.79ABC transporter G family member 35 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC04002E12SK FlavFr1 Citrus clementina cDNA clone C04002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291709 ID=CX291709; Name=CX291709; organism=Citrus clementina; type=EST; length=512bp
TTTTTTTTTTTTTTTTTTTTTTGCAAAAATTAAACTTCTTTATTCATTTA
ATTTTCATAAAAGAATACATTGGATTCCATATCACAATTTCTACTTAAAA
GTCAAGTAACAAGCAAAATTGAAAGATTACAATTCTAAGAATAGGTAGCA
TTCTAAAGATTTGAGCTACAGGTTTATCTCCTTTGGAAGTTGACGGACTT
GATGGCATAGGCAAACACAAATAAGAAGACGGCAATCCAGGCAAGATGCA
CAACAGCGACCACAGGAATGAAATCAGTCTTGTAATCGCAATTATCTTTG
ACAAATTGCTTCACTGTCATTGAAGTGCCATTAGGGATCTGCACCTGTGT
CTTTACGTCACCAACTTGACAAGTCACAAGGCCATACAGATTCCAAGCCA
CCGGAGAAAGCCAGTAGTACCACCTCCACCAGACAGGAATTTCCTGTCTG
GGAATCATGAAACCGGCGAACAAGTTCCATAGTGCAAGGAAGAAGGACAA
GACAATGGTAGC
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