CX291715

Overview
NameCX291715
Unique NameCX291715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: LACE1_MOUSE (Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.802e-22
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQG--FYFVGKGSSEVMKQKFRDLIGE--HEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ GLQR  F+PFI+ LKE C   ++ S VDYRK   A  G  +Y   +   E +  K  D + +  ++     +  V GR+L++       A   FEELC++PLGA+DY  L K F T+ +  +P F L  RT A RF TL+D  Y+ + R+
Sbjct:  251 LYKNGLQRANFVPFIAVLKEYCDTLQLDSGVDYRKRELAPAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLIDNFYDFKVRI 404          
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: LACE1_HUMAN (Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 5.242e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEAGPQEVEV--VMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ GLQR  F+PFI+ LKE C   ++ S +DYRK  + +A + +Y   +   E +  K  D + + +       +  V GR+L++       A   FEELC++PLGA+DY  L K F T+ L  +P F L NRT   RF TL+D  Y+ + R+
Sbjct:  251 LYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRI 404          
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: LACE1_RAT (Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRK--MTSAQQGFYFVGKGSSEVMKQKFRDLIGE--HEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ GLQR  F+PFI+ LKE C   ++ S VDYRK  +T A + +Y   +     +  K  D + +  ++     +  V GR+L++       A   FEELC++PLGA+DY  L K F T+ +  +P F L  RT   RF TL+D  Y+ + R+
Sbjct:  251 LYKNGLQRANFVPFIAVLKEYCNTVQLDSGVDYRKRELTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLIDNFYDFKVRI 404          
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: YBQ2_SCHPO (Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe GN=SPBC115.02c PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.085e-19
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGKGSSEVMKQK---FRDLIGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ G+QR+ F+P I  L+ R  V  + S  DYR++ S  +  Y     S EV K     F     E +   Q+   V GRK+ VP  +   A+F FE+LC +P  AADY  L   +H   +  +P   + ++   +RF T +D +Y+   +L
Sbjct:  234 LYKNGIQRESFIPCIKLLEHRLQVICLDSPNDYRRLKSKTEDTYLYPANSPEVKKALENWFLCYADEKDPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKLSIESKDLIHRFITFIDALYDTHGKL 386          
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: N2B_HAEIR (Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.692e-18
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYRKMTSAQQGFYFVGK--GSSEVMKQKFRDLIG-EHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ GLQR  F+PFI  L  RC V  + S VDYR++  +    YFV     +   M++ F+ L   E++          GR L             FEELC++PLG +DY  + + FHT+ +  VP   L  ++   RF TL+D +Y+NR R+
Sbjct:  236 LYKNGLQRSNFIPFIGVLLNRCNVAAMDSGVDYRRIAQSGDTNYFVTTQTDAKSQMERMFKILCSQENDIIRPRTITHFGRDLTFQRTCGQVLDSNFEELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRV 388          
BLAST of CX291715 vs. ExPASy Swiss-Prot
Match: LACE1_DANRE (Lactation elevated protein 1 homolog OS=Danio rerio GN=lace1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 50/154 (32.47%), Postives = 82/154 (53.25%), Query Frame = 2
Query:    2 LYERGLQRDLFLPFISTLKERCVVHEIGSSVDYR--KMTSAQQGFYFVGKGSSE-VMKQKFRDL-IGEHEAGPQEVEVVMGRKLQVPLGANGCAYFEFEELCDKPLGAADYFGLFKIFHTLALEGVPIFGLHNRTAAYRFATLVDVMYENRARL 451
            LY+ GLQR  F+PFI  LKE C +  + + +D+R  +M  A + +Y   +  +E  +   F +L   +++     V  V GR++ +       A   F+ELC++PLGA DY  + + F T+ +  VP   L  +  A RF TL+D  Y+ + R+
Sbjct:  273 LYKNGLQRAAFVPFIGVLKEYCRIVSLDTGIDFRTREMKPAGRLYYISSEPDAENAVNALFEELAFRQNDVTRPRVLNVQGREVTLSRTCGTIADCSFQELCEQPLGAGDYLEIARCFDTVIIRNVPYLQLGMKDQARRFTTLIDNFYDQKVRV 426          
The following BLAST results are available for this feature:
BLAST of CX291715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LACE1_MOUSE1.802e-2238.31Lactation elevated protein 1 OS=Mus musculus GN=La... [more]
LACE1_HUMAN5.242e-2237.66Lactation elevated protein 1 OS=Homo sapiens GN=LA... [more]
LACE1_RAT3.398e-2137.01Lactation elevated protein 1 OS=Rattus norvegicus ... [more]
YBQ2_SCHPO7.085e-1932.68Uncharacterized protein C115.02c OS=Schizosaccharo... [more]
N2B_HAEIR2.692e-1835.29Putative ATPase N2B OS=Haematobia irritans PE=2 SV... [more]
LACE1_DANRE1.131e-1632.47Lactation elevated protein 1 homolog OS=Danio reri... [more]
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Properties
Property NameValue
Genbank descriptionC04002F06SK FlavFr1 Citrus clementina cDNA clone C04002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291715 ID=CX291715; Name=CX291715; organism=Citrus clementina; type=EST; length=451bp
TCTATATGAACGTGGATTACAGAGGGATCTTTTTCTACCATTTATTTCCA
CTTTGAAGGAAAGATGTGTTGTCCACGAAATTGGCTCATCAGTAGACTAT
AGGAAAATGACTTCGGCTCAACAAGGTTTCTACTTTGTTGGCAAAGGTTC
ATCAGAAGTTATGAAGCAAAAGTTTCGGGACTTGATTGGTGAACATGAGG
CCGGACCACAGGAGGTGGAAGTAGTGATGGGAAGGAAATTGCAGGTTCCA
TTGGGTGCTAATGGATGTGCATATTTTGAATTTGAGGAGCTTTGTGACAA
ACCTCTTGGAGCTGCTGACTACTTTGGATTGTTCAAGATTTTTCATACCT
TGGCGCTGGAAGGTGTCCCCATATTTGGACTTCACAATAGGACAGCAGCA
TATCGGTTTGCTACTTTAGTTGATGTAATGTATGAGAACAGGGCTCGCCT
G
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