CX291719

Overview
NameCX291719
Unique NameCX291719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length281
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14274 contig Ccv1_Contig14274:827..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEAGKEPSYKGALDC 276
            EG+ SLW+G S  + RAM +TA Q++SYDQ K+ +L+ G+  D + TH+              +P+D IKTR+MN       E  YKG  DC
Sbjct:  177 EGIISLWKGCSPNLIRAMFMTAGQVSSYDQTKQLMLASGYFHDDIKTHLIASTTAAFVAAVATSPLDVIKTRIMNSPKTVTGELQYKGTFDC 268          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEAGKEPSYKGALD 273
            EGV +LWRG   T+ RA++V A+QLASY Q K+ +L  G+  D +  H                PVD +KTR+ NM++  GK P YK  LD
Sbjct:  175 EGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMIDGK-PEYKNGLD 264          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEAGKEPSYKGALD 273
            EGV +LWRG   T+ RA++V A+QLASY Q K+ +L  G+  D +  H                PVD +KTR+ NM++  GK P YK  LD
Sbjct:  175 EGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMIDGK-PEYKNGLD 264          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEAGKEPSYKGALD 273
            EGV +LWRG   T+ RA++V A+QLASY Q K+ +L  G+  D +  H                PVD  KTR+ NM++  GK P YK  LD
Sbjct:  175 EGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMIDGK-PEYKNGLD 264          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMR-DGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEA-GKEPSYKGALDC 276
            EG+  LW+G   T  RA L+TASQ+ SYD IK  IL  G ++ DGL  H+              +PVD +KTR+MN   ++ G    YK + DC
Sbjct:  154 EGIKGLWKGVGPTTQRAALLTASQIPSYDHIKHMILDHGIIQVDGLQVHIVSSIFAGLIASITTSPVDLVKTRIMNQPFDSNGVGLIYKSSYDC 247          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: KMCP1_RAT (Kidney mitochondrial carrier protein 1 OS=Rattus norvegicus GN=Slc25a30 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMK-VEAGKEPSYKGALDC 276
            EG   LW+G SLT  RA +V   +L  YD  K++++  G M D + TH               NPVD ++TR+MN + +  G+   YKG LDC
Sbjct:  156 EGTRGLWKGVSLTAQRAAIVVGVELPVYDITKKHLILSGLMGDTVSTHFLSSFTCGLVGALASNPVDVVRTRMMNQRDLRDGRCSGYKGTLDC 248          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: KMCP1_MOUSE (Kidney mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a30 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMK-VEAGKEPSYKGALDC 276
            EG   LW+G SLT  RA +V   +L  YD  K++++  G M D + TH               NPVD ++TR+MN + +  G+   YKG LDC
Sbjct:  156 EGTRGLWKGVSLTAQRAAIVVGVELPVYDITKKHLILSGLMGDTVATHFLSSFTCGLVGALASNPVDVVRTRMMNQRALRDGRCAGYKGTLDC 248          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: M2OM_RAT (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Rattus norvegicus GN=Slc25a11 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMKVEAGKEPSYKGALD 273
            EGV +LWRG   T+ RA++V A+QLASY Q K+ +L  G+  D +  H                PVD +KTR+ NM++   ++P YK  LD
Sbjct:  175 EGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCAIMISGLVTTAASMPVDIVKTRIQNMRM-IDEKPEYKNGLD 264          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: KMCP1_XENLA (Kidney mitochondrial carrier protein 1 OS=Xenopus laevis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 35/93 (37.63%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMK-VEAGKEPSYKGALDC 276
            EG   LW+G SLT  RA +V   +L  YD  K++++  G M D + TH               NPVD ++TR+MN + +      SYKG LDC
Sbjct:  156 EGTRGLWKGVSLTAQRAAIVVGVELPVYDITKKHLILSGLMGDTVYTHFLSSFTCGLAGALASNPVDVVRTRMMNQRSIRDASNSSYKGTLDC 248          
BLAST of CX291719 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 35/93 (37.63%), Postives = 48/93 (51.61%), Query Frame = 1
Query:    1 EGVTSLWRGSSLTVNRAMLVTASQLASYDQIKENILSKGWMRDGLGTHVTXXXXXXXXXXXXXNPVDAIKTRVMNMK-VEAGKEPSYKGALDC 276
            EG   LW+G SLT  RA +V   +L  YD  K++++  G M D + TH               NPVD ++TR+MN + +      SYKG LDC
Sbjct:  156 EGTRGLWKGVSLTAQRAAIVVGVELPVYDITKKHLILSGLMGDTVYTHFLASFTCGLAGALASNPVDVVRTRMMNQRSIRNVSNSSYKGTLDC 248          
The following BLAST results are available for this feature:
BLAST of CX291719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
M2OM_DICDI4.209e-1440.22Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_MOUSE3.016e-1241.76Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_BOVIN3.016e-1241.76Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_HUMAN8.776e-1241.76Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
UCPB_DICDI1.146e-1140.43Mitochondrial substrate carrier family protein ucp... [more]
KMCP1_RAT1.146e-1137.63Kidney mitochondrial carrier protein 1 OS=Rattus n... [more]
KMCP1_MOUSE1.146e-1137.63Kidney mitochondrial carrier protein 1 OS=Mus musc... [more]
M2OM_RAT1.497e-1139.56Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
KMCP1_XENLA1.497e-1137.63Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_XENTR3.335e-1137.63Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC04002F12SK FlavFr1 Citrus clementina cDNA clone C04002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291719 ID=CX291719; Name=CX291719; organism=Citrus clementina; type=EST; length=281bp
GAAGGCGTGACCAGCCTGTGGCGAGGATCGTCCCTTACTGTGAACCGGGC
CATGCTGGTCACCGCGTCGCAGCTGGCGTCCTACGATCAGATCAAAGAAA
ATATACTGTCAAAAGGGTGGATGCGCGACGGCCTCGGGACCCACGTGACG
GCGAGTTTTTCTGCGGGGTTTGTGGCGGCGGTGGCGTCGAATCCTGTGGA
CGCGATAAAGACTAGGGTTATGAACATGAAGGTCGAGGCCGGGAAAGAGC
CGTCGTACAAAGGGGCGCTGGATTGTGCCCT
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