CX291728

Overview
NameCX291728
Unique NameCX291728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig981 contig Ccv1_Contig981:1..321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.394e-46
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNM
Sbjct:   12 MCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.594e-44
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGHHLT+AAI+GHDGSVWAQSS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR              QAL+FGIY+EPLTPGQCNM
Sbjct:   12 MCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.125e-43
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNM
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.469e-43
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNM
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.919e-43
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNM
Sbjct:   12 MCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.506e-43
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGHHLT+AAI+GHDGSVWA SS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR              QAL+FGIY+EPLTPGQCNM
Sbjct:   12 MCDIDGHHLTAAAILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.274e-43
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSLAPTGLHLG TKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNM
Sbjct:   12 MCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSLAPTGLHLGSTKYMVIQGEPGAVIRGKKGSGGITVKKTSQALIIGIYDEPLTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSJ (Profilin LP04 OS=Oryza sativa subsp. japonica GN=Os06g0152100 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSLAPTGL LGGTKYMVIQGEPG VIR               +LI GIYDEP+TPGQCNM
Sbjct:   12 MCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSI (Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI_020954 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSLAPTGL LGGTKYMVIQGEPG VIR               +LI GIYDEP+TPGQCNM
Sbjct:   12 MCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNM 117
[Close]
BLAST of CX291728 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 79/106 (74.53%), Postives = 85/106 (80.19%), Query Frame = 2 
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNM 319
            MC+I+G+HLTSAAI+G DGSVWAQSS FPQFKPEEI AIM DF EPGSLAPTGL+L GTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNM
Sbjct:   12 MCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNM 117
The following BLAST results are available for this feature:
BLAST of CX291728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF3_HEVBR5.394e-4681.13Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_PYRCO6.594e-4478.30Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF6_HEVBR1.125e-4377.36Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF5_HEVBR1.469e-4377.36Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_LITCN1.919e-4377.36Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF1_MALDO2.506e-4377.36Profilin-1 OS=Malus domestica PE=1 SV=1[more]
PROF4_HEVBR4.274e-4377.36Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROFX_ORYSJ8.912e-4173.58Profilin LP04 OS=Oryza sativa subsp. japonica GN=O... [more]
PROFX_ORYSI8.912e-4173.58Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI... [more]
PROF1_RICCO8.912e-4174.53Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC04002G12SK FlavFr1 Citrus clementina cDNA clone C04002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291728 ID=CX291728; Name=CX291728; organism=Citrus clementina; type=EST; length=321bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGGTTCTGGTGGTGTCACCGTC
AAGAAAACGGGCCAAGCCCTGATTTTTGGTATATACGATGAACCATTGAC
TCCAGGACAGTGCAACATGAT
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