CX291735

Overview
NameCX291735
Unique NameCX291735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291735 vs. ExPASy Swiss-Prot
Match: RAD17_ARATH (Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.887e-38
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1
Query:  157 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSLSIPGESKSSAILLID 546
            LW +KY+PR+LEEL+V +KKV+EV+ WF+E L   K+    NVL++TGQAGVGK+AT+  I S LG  ++EW+ P PTIWQE++HN  +GL+YTSKLDEFENFVE  R+YG  + S     K+  +LLID
Sbjct:   92 LWVDKYRPRTLEELSVHKKKVDEVKLWFQESLDFLKNGLRNNVLLVTGQAGVGKSATIHLITSILGVTVHEWNAPIPTIWQEHVHNTSSGLKYTSKLDEFENFVESTRKYGVMASSSTDGIKAPVVLLID 221          
BLAST of CX291735 vs. ExPASy Swiss-Prot
Match: RAD17_MOUSE (Cell cycle checkpoint protein RAD17 OS=Mus musculus GN=Rad17 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   22 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASTSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLE-------YTSKLDEFENFVERIRRYGSTSLSIPGESKSSAILLID 546
            K  P +LE + +     GR L+  +  GL     +++    S  + W +KYKP +  ELAV +KK+EEV  W + ++ + K K   +VL+ITG  G GKT T++ ++  LG ++ EW  P    +Q+  +     LE       Y S++  F +F+ R  +Y    +     +    I+L++
Sbjct:   50 KYLPSTLESNRLSARKRGR-LSLEQTHGL-----ETSRERLSDNEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTIKILSKELGIQVQEWVNPILPDFQKDDYKELLSLESNFSVVPYQSQIAVFNDFLLRATKYSKLQMLGDDLTTDKKIILVE 225          
BLAST of CX291735 vs. ExPASy Swiss-Prot
Match: RAD17_PONAB (Cell cycle checkpoint protein RAD17 OS=Pongo abelii GN=RAD17 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 50/182 (27.47%), Postives = 86/182 (47.25%), Query Frame = 1
Query:   22 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASTSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ----EYMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSLSIPGESKSSAILLID 546
            KN P +LE         G   +  +  GL N     +    S  + W +KYKP +  ELAV +KK+EEV  W + ++ + + K   ++L+ITG  G GKT T++ ++   G ++ EW  P    +Q    + M N ++      Y S++  F+ F+ R  +Y    +          I+L++
Sbjct:   50 KNGPSTLESSRFPARKRGNLSSLEQIYGLEN-----SKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVE 226          
BLAST of CX291735 vs. ExPASy Swiss-Prot
Match: RAD17_HUMAN (Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 50/182 (27.47%), Postives = 86/182 (47.25%), Query Frame = 1
Query:   22 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASTSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ----EYMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSLSIPGESKSSAILLID 546
            KN P +LE         G   +  +  GL N     +    S  + W +KYKP +  ELAV +KK+EEV  W + ++ + + K   ++L+ITG  G GKT T++ ++   G ++ EW  P    +Q    + M N ++      Y S++  F+ F+ R  +Y    +          I+L++
Sbjct:   50 KNGPSTLESSRFPARKRGNLSSLEQIYGLEN-----SKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVE 226          
BLAST of CX291735 vs. ExPASy Swiss-Prot
Match: RAD17_CERAE (Cell cycle checkpoint protein RAD17 OS=Cercopithecus aethiops GN=RAD17 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 49/182 (26.92%), Postives = 86/182 (47.25%), Query Frame = 1
Query:   22 KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASTSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE----YMHNCKTGLE---YTSKLDEFENFVERIRRYGSTSLSIPGESKSSAILLID 546
            KN P +LE         G   +  +   L N     +  S S  + W +KYKP +  ELAV +KK+EEV  W + ++ + + K   ++L+ITG  G GKT T++ ++   G ++ EW  P    +Q+     + N ++      Y S++  F+ F+ R  +Y    +          I+L++
Sbjct:   39 KNGPSTLESSKFPVRKRGNLSSLEQIYSLEN-----SKESLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTIKVLSKEHGIQVQEWINPVLPDFQKDDFREIFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVE 215          
The following BLAST results are available for this feature:
BLAST of CX291735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RAD17_ARATH2.887e-3856.15Cell cycle checkpoint protein RAD17 OS=Arabidopsis... [more]
RAD17_MOUSE6.919e-1629.12Cell cycle checkpoint protein RAD17 OS=Mus musculu... [more]
RAD17_PONAB5.858e-1527.47Cell cycle checkpoint protein RAD17 OS=Pongo abeli... [more]
RAD17_HUMAN9.991e-1527.47Cell cycle checkpoint protein RAD17 OS=Homo sapien... [more]
RAD17_CERAE1.305e-1426.92Cell cycle checkpoint protein RAD17 OS=Cercopithec... [more]
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Properties
Property NameValue
Genbank descriptionC04002H07SK FlavFr1 Citrus clementina cDNA clone C04002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291735 ID=CX291735; Name=CX291735; organism=Citrus clementina; type=EST; length=548bp
AGACAGCAACTGTGGACCAATAAAAACAAACCTTGTTCCTTGGAAGAACA
TGCTATTCAGAAAGAGAATGTTGGGCGTTTTTTAACTCCCTCAAGATTTG
AAGGTTTAGTCAATCCAGACCATGATTCAGCATCAGCAAGTACCAGCACA
CAGCAACTGTGGGCTGAAAAATATAAACCTCGTTCCTTGGAAGAACTTGC
CGTTCAGAGAAAGAAGGTCGAAGAAGTTAGGGCATGGTTTGAGGAAAGGT
TGGGAGATTCAAAGGACAAATTTAGTACTAACGTTCTTGTCATCACTGGG
CAAGCTGGAGTCGGAAAAACTGCAACTGTCCGTCAGATTGCTTCTCACCT
TGGAGCCAGATTATATGAATGGGACACTCCAACTCCCACAATTTGGCAAG
AATATATGCATAATTGTAAAACAGGGCTCGAGTACACATCTAAGTTGGAT
GAGTTTGAGAATTTTGTTGAGAGAATAAGGAGGTACGGTTCAACCTCACT
GTCCATTCCTGGAGAATCAAAATCATCAGCTATACTTCTAATTGATGA
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