CX291737

Overview
NameCX291737
Unique NameCX291737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291737 vs. ExPASy Swiss-Prot
Match: Y4205_MYCGI (Uncharacterized oxidoreductase Mflv_4205 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_4205 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   57 GPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIE 260
            G +L  S V+ IA+ H +TP QV++RW LQ G  V+P S  P+RIR NID+F + LS+++ + LN ++
Sbjct:  197 GNLLSHSAVNAIAEAHGRTPAQVLIRWSLQLGNIVIPRSSSPERIRSNIDVFGFELSEEQMSTLNGLD 264          
BLAST of CX291737 vs. ExPASy Swiss-Prot
Match: ALDR_HORVU (Aldose reductase OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   78 VVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEPQVCLFGNEPL 293
            VV ++A+K  KTP QV+++W LQRGTSV+P S K +RI++NI +F W + ++++  L  I+ +  +   E L
Sbjct:  229 VVEKVANKLNKTPGQVLIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEEL 300          
BLAST of CX291737 vs. ExPASy Swiss-Prot
Match: XYL1_TRIRE (NAD(P)H-dependent D-xylose reductase OS=Trichoderma reesei GN=xyl1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 33/100 (33.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   12 TGTPRISFRRSRSVHGPMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIEPQVCLFGNEPLNKLSAS 311
            TG   +   R++SV  P++   V+  +ADKH++TP QV+LRW  QRG +V+P + +P+ + +N+D  S+ L  ++  ++  ++  +    N+P N  SA+
Sbjct:  222 TGFMELDMPRAKSV-APLMDSPVIKALADKHRRTPAQVLLRWATQRGIAVIPKTSRPEVMAQNLDNTSFDLDSEDLAKIADMDLNIRF--NKPTNYFSAN 318          
BLAST of CX291737 vs. ExPASy Swiss-Prot
Match: XYL1_ASPNG (NAD(P)H-dependent D-xylose reductase OS=Aspergillus niger GN=xyrA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 26/67 (38.81%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   60 PMLKLSVVSEIADKHKKTPEQVILRWGLQRGTSVLPCSLKPDRIRKNIDIFSWSLSDDEWNRLNQIE 260
            P+ +  +V  IA+KH +TP QV+LRW  QRG +V+P S  P R+++N+D+  W+L ++E   ++ ++
Sbjct:  235 PLFEHQLVKSIAEKHGRTPAQVLLRWATQRGIAVIPKSNNPQRLKQNLDVTGWNLEEEEIKAISGLD 301          
The following BLAST results are available for this feature:
BLAST of CX291737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y4205_MYCGI1.158e-1145.59Uncharacterized oxidoreductase Mflv_4205 OS=Mycoba... [more]
ALDR_HORVU5.749e-1141.67Aldose reductase OS=Hordeum vulgare PE=1 SV=1[more]
XYL1_TRIRE9.806e-1133.00NAD(P)H-dependent D-xylose reductase OS=Trichoderm... [more]
XYL1_ASPNG9.806e-1138.81NAD(P)H-dependent D-xylose reductase OS=Aspergillu... [more]
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Properties
Property NameValue
Genbank descriptionC04002H09SK FlavFr1 Citrus clementina cDNA clone C04002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291737 ID=CX291737; Name=CX291737; organism=Citrus clementina; type=EST; length=579bp
GGGAAGATGAAACTGGAACTCCACGCATATCATTTAGAAGGTCAAGATCG
GTGCATGGGCCAATGCTGAAATTATCGGTCGTTTCAGAGATAGCAGATAA
GCACAAGAAAACACCTGAGCAGGTTATTCTACGCTGGGGACTGCAAAGGG
GTACAAGTGTCCTACCTTGCAGCTTGAAGCCTGATCGGATAAGGAAAAAC
ATAGACATTTTCAGTTGGTCTCTGTCAGACGATGAGTGGAACCGCTTGAA
CCAGATTGAACCGCAGGTATGTTTATTTGGAAACGAGCCTTTGAATAAGC
TGTCAGCCTCAGACAGTGGCTTCACATTTGGTAGCGGTCCCCTTCAATCT
GTGCGGGAGATGGAAGATGATGTGGAGTCCAATGCCTGATTTTTTTCTTG
AGATAATGTGTCTTCTTTTTTTTTTTTCTCCCCCAAAGATGTCATCAAAT
TACAGTTTGTCAAATACCCATTGTTGTAAGATTTGGTTCTGTGGATGCTG
AATAGAATGGTCAAAGATGGGTTATTGATTGAATTGGCATATGTTTGTTC
CTAGCTTGCTAGTCCTATCTTCAACAAAT
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