CX291739

Overview
NameCX291739
Unique NameCX291739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5156 contig Ccv1_Contig5156:99..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291739 vs. ExPASy Swiss-Prot
Match: Y1480_ARATH (Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.881e-31
Identity = 64/110 (58.18%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   16 EHKNPLCKNVPSLLSSFVDTFVDFTVSGGLFLPNPDPKTSQNVREPTTRLPRVDRLIAIGDLHGDLEKSKQALRLAGLINGSDQWTGGTATVVQIGDVLDRGDDEIKILY 345
            E+ + +CK++P L+SSFVDTFVD++VSG +FLP  DP +   + +  TR  + +RL+AIGDLHGDLEKS++A ++AGLI+ SD+WTGG+  VVQ+GDVLDRG +E+KILY
Sbjct:    5 ENPSGICKSIPKLISSFVDTFVDYSVSG-IFLPQ-DPSSQNEILQ--TRFEKPERLVAIGDLHGDLEKSREAFKIAGLIDSSDRWTGGSTMVVQVGDVLDRGGEELKILY 110
The following BLAST results are available for this feature:
BLAST of CX291739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1480_ARATH2.881e-3158.18Uncharacterized protein At1g18480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC04002H11SK FlavFr1 Citrus clementina cDNA clone C04002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291739 ID=CX291739; Name=CX291739; organism=Citrus clementina; type=EST; length=346bp
CACGAGGAGGAGACAGAACACAAAAACCCTTTATGCAAAAACGTGCCTTC
CTTACTCTCTTCATTCGTAGACACTTTCGTCGATTTCACAGTCAGCGGTG
GCCTTTTCTTACCGAACCCAGATCCCAAAACTTCCCAAAATGTTCGCGAA
CCCACCACGCGCCTCCCACGCGTTGATCGTCTTATTGCCATCGGTGACCT
TCATGGGGACTTGGAGAAATCAAAGCAAGCGCTCAGATTGGCTGGCTTGA
TCAACGGTTCTGATCAATGGACTGGTGGGACGGCCACTGTTGTACAAATT
GGTGATGTACTGGATCGAGGTGATGATGAGATCAAGATTCTTTATT
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