CX291748

Overview
NameCX291748
Unique NameCX291748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.574e-30
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 2
Query:   14 PHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLPHNTLAPCTMPTE 277
            P +G A+RLVK ALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVF D            P VSVRG G+ LPHNTLAPCT PT+
Sbjct:  306 PRNGIAKRLVKVALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAPCTTPTQ 393          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.373e-28
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 2
Query:   11 DPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLPHNTLAPCTMPTETGGT 289
            +P +G ARRLVK A+QEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLD            P+VS+RGGG+TLP N+LAP + PT    T
Sbjct:  306 NPRNGIARRLVKVAMQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNAISKANWSRGPSVSLRGGGVTLPANSLAPFSTPTVLSST 398          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.059e-28
Identity = 62/85 (72.94%), Postives = 67/85 (78.82%), Query Frame = 2
Query:    5 HEDPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLPHNTLAP 259
            H  P +GSARRL+KAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLD            P+VS+RGGG+ L  NTLAP
Sbjct:  303 HSSPRNGSARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSSLVSRASTYRGPSVSLRGGGVNLRSNTLAP 387          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.533e-27
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 2
Query:   11 DPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLPHNTLAPCTMPT 274
            +P +G ARRLVKAA+Q+AAKKREMRYSDLKKIDRGVRRHFHDDITV+VVF D            P+VS+RGGG+TLP N+LAP ++PT
Sbjct:  307 NPRNGIARRLVKAAMQQAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFFD-SNAITTANWSRPSVSLRGGGVTLPANSLAPFSVPT 393          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:   14 PHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLP 241
            P +G ARRLVKAALQEAAKKREMRYSDL KI+RGVRRHFHDDITV+V+FLD            P+VS+RGGGITLP
Sbjct:  307 PRNGIARRLVKAALQEAAKKREMRYSDLNKIERGVRRHFHDDITVVVLFLDTNLLSRASSLKTPSVSIRGGGITLP 382          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.245e-21
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   14 PHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLP 241
            P +G ARRLVK ALQEAAKKREMRYSDLKKI+RGVRRHFHDDITV+++FLD            P +S+RGGG+T P
Sbjct:  304 PRNGIARRLVKMALQEAAKKREMRYSDLKKIERGVRRHFHDDITVVIIFLD---TNQVSSVKGPPLSIRGGGMTFP 376          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.830e-20
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   14 PHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGGITLPHN 247
            P +G AR+LVKAALQEAAKKREMRYSDL+KI+RG+RRHFHDDITVIVVFL               +SV+GGG+   HN
Sbjct:  309 PRNGVARKLVKAALQEAAKKREMRYSDLEKIERGIRRHFHDDITVIVVFLHATNFATRTP-----ISVKGGGLLSAHN 381          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.595e-19
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   14 PHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRGGG 229
            P +G AR+L+K AL+EAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLD            P +S+ GGG
Sbjct:  308 PRNGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLD-SHLVSRSTSRRPLLSISGGG 378          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    5 HEDPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLD 166
            H  P +GSA+RL+KAAL EAA+KREMRYSDL+KID+ VRRHFHDDITVIVVFL+
Sbjct:  306 HNHPRAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVVFLN 359          
BLAST of CX291748 vs. ExPASy Swiss-Prot
Match: P2C43_ORYSJ (Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584366 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.860e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2
Query:    5 HEDPHSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDXXXXXXXXXXXXPNVSVRG 223
            H +P  G ARRLVKAAL+EAA+KREM+Y+D+KK+++GVRR FHDDITV+VVF+D            P +SVRG
Sbjct:  300 HNNPREGIARRLVKAALKEAARKREMKYNDIKKLEKGVRRFFHDDITVVVVFID-HELLQDGDESTPEISVRG 371          
The following BLAST results are available for this feature:
BLAST of CX291748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2C64_ARATH5.574e-3072.73Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C28_ORYSJ1.373e-2867.74Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C60_ORYSJ3.059e-2872.94Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C72_ORYSJ7.533e-2768.18Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C79_ARATH2.679e-2472.37Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C46_ARATH1.245e-2167.11Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C48_ARATH6.830e-2064.10Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C38_ARATH2.595e-1968.06Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C42_ARATH6.392e-1877.78Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]
P2C43_ORYSJ1.860e-1758.90Probable protein phosphatase 2C 43 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC04004B04SK FlavFr1 Citrus clementina cDNA clone C04004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291748 ID=CX291748; Name=CX291748; organism=Citrus clementina; type=EST; length=516bp
TCGGCACGAGGATCCACACAGTGGAAGTGCAAGGAGGCTTGTGAAAGCTG
CTTTACAAGAAGCAGCAAAAAAGAGAGAAATGAGATATTCTGACTTGAAG
AAGATAGACCGTGGCGTCCGCCGGCATTTCCACGATGACATCACAGTAAT
AGTTGTGTTTCTTGACTCGAGCCTCGTGAGTAGGGCTAGCTCAGTCAAGT
CCCCGAATGTATCGGTGAGAGGGGGTGGGATCACCTTGCCCCATAACACA
TTAGCTCCTTGCACTATGCCAACAGAAACTGGTGGTACCTGATATGATTA
TGTATCTCACGTCTCTATATGTTGTATTGTATCATTCTCTTGTGTGAATA
CCAGCAGGTAGCTTCCAGAAGCGATAAGAGGAGCAAGCCTTCAATTCTTT
AATGTACACTGTAACTTTTTACCCTGAGGACTGATACTTGCATTTAGCTT
CTGTGCCCTAGAACTTTGAAAGAACTGGAGAAGAGGAGTATAAATTGACA
ATTATTATAGTTGTTA
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