CX291750

Overview
NameCX291750
Unique NameCX291750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291750_ssr311 microsatellite CX291750_ssr311:311..322. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:499..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.225e-31
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 287
            PQ GNG VL NFDV TPDAFD++Y++NLR  KGL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  239 PQNGNGTVLVNFDVVTPDAFDSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.654e-31
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 287
            PQGG+G  + N D  TPD FDN YFSNL+  +GLLQSDQELFST GA T AIV +F  NQTAFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  233 PQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.768e-30
Identity = 68/114 (59.65%), Postives = 80/114 (70.18%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDLVSS 344
            PQ GNG VL NFDV TP+ FD +Y++NLR  KGL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  239 PQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.955e-29
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 287
            P+ GNG VL NFDV TP+ FDN++++NLR  KGL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  210 PRNGNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.554e-29
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 293
            PQ G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T AIV  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  239 PQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.823e-28
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 293
            PQ G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T A+V  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  209 PQNGSASTITNLDLSTPDAFDNNYFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.816e-28
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 287
            PQ GNG VL NFD  TP  FD +Y++NL   KGL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  239 PQNGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.401e-27
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDL 335
            PQ G+   + N D+ TPDAFDN YF+NL+   GLLQSDQELFS  G+ T  IV  F  NQT FF+ FV SMI+MGN+ PLTG+ GEIR +C+ VNG +     S++  GD+
Sbjct:  240 PQNGSNTGITNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQS-----SATEAGDI 345          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.451e-26
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 296
            P+ GN +VL +FD++TP  FDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  219 PRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 317          
BLAST of CX291750 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.508e-26
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    3 PQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 296
            P  GN +VL +FD++TP  FDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  F      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  238 PLNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 336          
The following BLAST results are available for this feature:
BLAST of CX291750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PER22_ARATH1.225e-3166.32Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER15_IPOBA4.654e-3167.37Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER3_ARMRU1.768e-3059.65Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PERE5_ARMRU1.955e-2964.21Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER53_ARATH2.554e-2960.82Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU2.823e-2858.76Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER23_ARATH4.816e-2864.21Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER54_ARATH1.401e-2754.05Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER1C_ARMRU3.451e-2657.58Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER1B_ARMRU4.508e-2658.59Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04004B07SK FlavFr1 Citrus clementina cDNA clone C04004B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291750 ID=CX291750; Name=CX291750; organism=Citrus clementina; type=EST; length=499bp
GCCCACAGGGTGGAAACGGCGCCGTTCTTGCTAATTTTGATGTCAAAACA
CCTGATGCTTTCGACAACAAATACTTCTCCAATCTTAGACTCCGCAAAGG
CCTTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTGCCGATACCG
CTGCCATTGTCGAGGACTTTGGGAGGAACCAGACTGCTTTCTTTAAAAAC
TTTGTGATCTCAATGATAAGAATGGGCAATTTGAAACCACTGACAGGAAA
TCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAATGGAAACAATAATA
TTGCAACAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTAA
TAAGCTAGCTTGCGGCATATGCGAGAGAGTTTTTGTGCTTAACAAACTCG
AATTTAATCTTATCGTTTGGCCTGAAACATGTTATGTGTTTTCAAATAAA
TTAACTATCAAACTTGAGTTTAATCTAATTTTCTTGTCTGAAACATGCT
back to top