CX291751

Overview
NameCX291751
Unique NameCX291751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length239
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2912 contig Ccv1_Contig2912:145..383. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291751 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 59/79 (74.68%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:    2 KMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGK 238
            KMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GK
Sbjct:   28 KMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGK 106
[Close]
BLAST of CX291751 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.757e-27
Identity = 56/79 (70.89%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:    2 KMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGK 238
            +MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GK
Sbjct:   27 QMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGK 105
[Close]
BLAST of CX291751 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.079e-25
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:    2 KMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGK 238
            +MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GK
Sbjct:   27 QMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGK 105
[Close]
BLAST of CX291751 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.099e-25
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 2 
Query:    2 KMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGK 238
            +MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GK
Sbjct:   27 QMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGK 105
The following BLAST results are available for this feature:
BLAST of CX291751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL6_MESCR1.153e-2774.6860S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH9.757e-2770.8960S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.079e-2569.6260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.099e-2568.3560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC04004B08SK FlavFr1 Citrus clementina cDNA clone C04004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291751 ID=CX291751; Name=CX291751; organism=Citrus clementina; type=EST; length=239bp
CAAAATGTACCACAAGCGCGGCCTCTGGGCAATCAAGGCAAAAAACGGCG
GCGTTTTCCCGAAACACGACCCAAAGCCTGCTGCCGCTGAGACGCCAGCC
AAGCCTCCCAAGTTCTACCCAGCTGATGATGTCAAGAAGCCGCTCGTCAA
CAAGCGAAAGCACAAACCCACCAAACTCAGAGCGAGTATTACACCTGGGA
CAGTGTTTATTCTATTGGCTGGAAGGTTTATGGGGAAGA
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