CX291755

Overview
NameCX291755
Unique NameCX291755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 8.803e-81
Identity = 147/177 (83.05%), Postives = 166/177 (93.79%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCVDELCNARMVPTHTHLSKDAK 548
            TTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+AVGVDP++MGIGPAVAIPAAVK+AGL++DDI+LFEINEAFASQ+VYC  KLGLDPEK+NVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGV+SMCIG+GMGAAAVFERGD VDEL NAR V     LSKDA+
Sbjct:  286 TTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKDAR 462          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.244e-76
Identity = 136/166 (81.93%), Postives = 158/166 (95.18%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCVDELCNARMV 515
            TTAGN+SQ+SDGAGAVLLM+R++A+QKGLPILGVFR+FSAVGVDP++MG+GPAVAIPAAVK+AGL+++D++LFEINEAFASQ+VYC  KLGLD EK+NVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGV+SMCIGSGMGAAAVFERG  VDELC+ R V
Sbjct:  278 TTAGNSSQLSDGAGAVLLMRRNVAMQKGLPILGVFRTFSAVGVDPAIMGVGPAVAIPAAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFERGGGVDELCDVRKV 443          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 1.900e-75
Identity = 141/172 (81.98%), Postives = 154/172 (89.53%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDCVDELCNARMVPTHTH 530
            +TTAGNASQ+SDGAGAVLLMKRSLA++KGLPILGVFRSF+  GV+PSVMGIGPAVAIPAA K AGL + DI+LFEINEAFASQYVY  KKL LD EKVNVNGGA+A+GHPLGATGARCVATLL EMKRRGKDCRFGVISMCIG+GMGAAAVFERGD VD L NAR+    +H
Sbjct:  286 STTAGNASQISDGAGAVLLMKRSLAMKKGLPILGVFRSFAVTGVEPSVMGIGPAVAIPAATKLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEKVNVNGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNARVANGDSH 457          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 108/153 (70.59%), Postives = 130/153 (84.97%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            +TTAGN+SQVSDGA AVLL +RS A + GLPILGV RS++ VGV P VMGIGPA AIPAA++ AGL ++DI++FEINEAFASQ VYC++KLG+  EKVN  GGA+ALGHPLG TGAR V TLL+E+KRRG+   +GV+SMCIG+GMGAAAVFE
Sbjct:  269 STTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 108/153 (70.59%), Postives = 130/153 (84.97%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            +TTAGN+SQVSDGA AVLL +RS A + GLPILGV RS++ VGV P VMGIGPA AIPAA++ AGL ++DI++FEINEAFASQ VYC++KLG+  EKVN  GGA+ALGHPLG TGAR V TLL+E+KRRG+   +GV+SMCIG+GMGAAAVFE
Sbjct:  269 STTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.084e-54
Identity = 106/153 (69.28%), Postives = 130/153 (84.97%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            +TTAGN+SQVSDGA AVLL +RS A + GLPILGV RS++ VGV P +MGIGPA AIPAA++ AGL ++DI++FEINEAFASQ +YC++KLG+  EKVN  GGA+ALGHPLG TGAR V TLL+E+KRRG+   +GV+SMCIG+GMGAAAVFE
Sbjct:  269 STTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.084e-54
Identity = 106/153 (69.28%), Postives = 130/153 (84.97%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            +TTAGN+SQVSDGA AVLL +RS A + GLPILGV RS++ VGV P +MGIGPA AIPAA++ AGL ++DI++FEINEAFASQ +YC++KLG+  EKVN  GGA+ALGHPLG TGAR V TLL+E+KRRG+   +GV+SMCIG+GMGAAAVFE
Sbjct:  269 STTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.414e-54
Identity = 106/153 (69.28%), Postives = 127/153 (83.01%), Query Frame = 3
Query:   15 ATTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            +TTAGN+SQVSDGA A+LL +RS A + GLPILGV RS++ VGV P +MGIGPA AIP A++ AGL + D+++FEINEAFASQ  YC++KL L PEKVN  GGAVALGHPLG TGAR V TLL+E+KRRGK   +GV+SMCIG+GMGAAAVFE
Sbjct:  269 STTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.759e-48
Identity = 94/151 (62.25%), Postives = 117/151 (77.48%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVF 470
            TTAGNASQVSDG   VLL +RS+A Q  LP+LG +  F  VGV P +MG+GPA AIP  +++ GLQ+ DI++FEINEAFA+Q +YCI KLG+D  KVN  GGA+ALGHPLG TGAR VAT+L E+K+     + GV+SMCIG+GMGAAA+F
Sbjct:  268 TTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 414          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.419e-46
Identity = 96/151 (63.58%), Postives = 114/151 (75.50%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            TAGN+SQ SDGA AV+LM R  A   GL  L  FRSF+  GV P VMGIGP  AIP A+K AGLQ+ DI LFE+NEAFASQ +  I++LG+D EKVNVNGGA+ALGHPLG TG +   +L+ EMKRR +  +FGV++MCIG GMGAA VFE
Sbjct:  241 TAGNSSQTSDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMGIGPVEAIPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKRRNE--QFGVVTMCIGGGMGAAGVFE 389          
The following BLAST results are available for this feature:
BLAST of CX291755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIK2_ARATH8.803e-8183.053-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH2.244e-7681.933-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH1.900e-7581.983-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_MOUSE3.724e-5570.593-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE3.724e-5570.593-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIKB_RAT1.084e-5469.283-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_RAT1.084e-5469.283-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIK_HUMAN2.414e-5469.283-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIK_YEAST5.759e-4862.253-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_BACSU1.419e-4663.583-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]

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Properties
Property NameValue
Genbank descriptionC04004C05SK FlavFr1 Citrus clementina cDNA clone C04004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291755 ID=CX291755; Name=CX291755; organism=Citrus clementina; type=EST; length=569bp
GAATTCGGCACGAGGCGACAACTGCTGGGAATGCTAGCCAGGTCAGTGAT
GGAGCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGG
TCTTCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATC
CTTCTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAG
TCTGCAGGTCTTCAGATTGATGATATTAATTTGTTTGAGATAAATGAGGC
ATTTGCATCCCAGTATGTTTATTGTATTAAGAAACTGGGGCTTGATCCTG
AAAAAGTCAATGTTAATGGAGGTGCAGTGGCTCTTGGGCATCCTCTGGGT
GCGACAGGTGCACGCTGTGTTGCAACTCTATTGAGTGAGATGAAGCGTCG
TGGCAAAGATTGTCGATTTGGAGTGATCTCCATGTGCATAGGCTCAGGCA
TGGGGGCTGCAGCAGTTTTCGAGAGAGGAGATTGTGTTGACGAACTATGC
AATGCTCGAATGGTTCCAACTCACACCCACTTGTCAAAGGATGCCAAGTA
GATGCATTTGTTTGCAATT
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