CX291758

Overview
NameCX291758
Unique NameCX291758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11147 contig Ccv1_Contig11147:213..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 6.496e-36
Identity = 84/173 (48.55%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 EYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXX------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +YVN SRWY HIDALLRI               AP+                           LFG                              VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EPINEYVQ
Sbjct:   49 QYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.447e-35
Identity = 84/173 (48.55%), Postives = 93/173 (53.76%), Query Frame = 2
Query:    2 EYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXX------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            E+VNVSRW+ HIDALLRI               +P+                           LFG                              VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EPINEYVQ
Sbjct:   49 EFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 7.182e-35
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEPINE+VQ
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQ 214          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.090e-34
Identity = 80/167 (47.90%), Postives = 91/167 (54.49%), Query Frame = 2
Query:    2 EYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +YVNVSRWY H++ALLRI               +                       LFG                              VLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+Q
Sbjct:   50 KYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQ 216          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 7.940e-34
Identity = 91/171 (53.22%), Postives = 94/171 (54.97%), Query Frame = 2
Query:    5 YVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAP---VATXXXXXXXXXXXXXXXXXXX-LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            YVNVSRWYKHIDALLRI               AP   VAT                    LFG                               VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EPINEYVQ
Sbjct:   51 YVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQ 221          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.769e-33
Identity = 80/166 (48.19%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    5 YVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            YVNV+RWY HI ALLR                A   +                   LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++Q
Sbjct:   51 YVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQ 216          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 6.722e-33
Identity = 82/169 (48.52%), Postives = 93/169 (55.03%), Query Frame = 2
Query:    5 YVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXA-PVATXXXXXXXXXXXXXXXXXXX--LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            Y NV+RW+ HIDALLR+               A P A+                     LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+Q
Sbjct:   51 YTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQ 219          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+Q
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQ 218          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.643e-29
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL S  T IEE L E PINEYVQ
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQ 206          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.691e-29
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+Q
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQ 214          
The following BLAST results are available for this feature:
BLAST of CX291758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D1_ARATH6.496e-3648.55Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ARATH1.447e-3548.55Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1B_ORYSJ7.182e-3593.51Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D_PIMBR2.090e-3447.90Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU7.940e-3453.22Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1D2_ORYSJ1.769e-3348.19Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D1_ORYSJ6.722e-3348.52Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1B1_ARATH2.824e-3184.42Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT2.643e-2984.42Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
EF1B2_ARATH7.691e-2979.22Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC04004D02SK FlavFr1 Citrus clementina cDNA clone C04004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291758 ID=CX291758; Name=CX291758; organism=Citrus clementina; type=EST; length=504bp
TGAATATGTCAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAA
GGATCTCTGGCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCT
GCTCCTGTTGCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGA
TGATGACGACGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAA
AGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAG
AAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGA
TGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGG
AAGGATTACTCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATC
AAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGA
CACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAATGAATATGTCC
AGAG
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