CX291759

Overview
NameCX291759
Unique NameCX291759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length243
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:36..278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.171e-18
Identity = 49/72 (68.06%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPS FG R  SV DPFS DVW P        S S E S F S +VDWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVK 72          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.171e-18
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL------------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPSIFG R  +V DPFS D+W P              S++ +V+ F +A+VDWKETPEAHVFKADLPGLKKEEVK
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVK 78          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.704e-18
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   50 MSLIPSIFGNR---SVLDPFSSDVWAP---LG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP IFG+R   SV DPFS DV+ P   LG   S+S E S FA+ ++DWKETPEAHVFKADLPGLKKEEVK
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPLG------SSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPSIFG R  +V DPFS DVW P        S S E S F + +VDWKETPEAHVF+AD+PGLKKEEVK
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVK 72          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 2
Query:   50 MSLIPSIFGNR---SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP IFG+R   S+ DPFS DV+ P       G++S E S FA+ ++DWKETPEAHVFKADLPGLK EEVK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 46/73 (63.01%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP  FG R  +V DPFS D+W        P  S S E S F S +VDWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   50 MSLIPSIFGNR----SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPS FGN     S+ DPFS DVW P        S S E S   +A+VDWKET EAHVFKADLPG+KKEEVK
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVK 74          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 47/77 (61.04%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPS FG R  +V DPFS DVW P             S   E S F S +VDWKETPEAHVFKADLPG+KKEEVK
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVK 77          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.348e-17
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSL+PS FG R  +V DPFS DVW P           + + +V+ F +A+VDW+ETPEAHVFKAD+PGLKKEEVK
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVK 75          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.123e-17
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL---------GSSSN---EVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MS+IPS FG+R  +VL+PFS D+W P          G+SS    E + FA+  +DWKETP+AHVFKADLPGLKKEEVK
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVK 78          
The following BLAST results are available for this feature:
BLAST of CX291759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HSP11_SOYBN2.171e-1868.0617.3 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ARATH2.171e-1860.2618.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_SOLPE3.704e-1868.4917.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP13_SOYBN1.838e-1765.2817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.838e-1763.0117.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP14_SOYBN3.135e-1763.0117.5 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH3.135e-1762.1617.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_MEDSA4.095e-1761.0418.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP17_ARATH5.348e-1757.3317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_DAUCA9.123e-1757.6918.0 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionC04004D03SK FlavFr1 Citrus clementina cDNA clone C04004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291759 ID=CX291759; Name=CX291759; organism=Citrus clementina; type=EST; length=243bp
GCACGAGGACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAA
TGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGCTCGACCCATTT
TCCTCGGACGTTTGGGCGCCCCTTGGCTCATCCAGCAATGAGGTGTCAAC
ATTTGCCAGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTT
TCAAGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGT
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