CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:640..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIAS_MOUSE (Lipoyl synthase, mitochondrial OS=Mus musculus GN=Lias PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.269e-40
Identity = 85/143 (59.44%), Postives = 107/143 (74.83%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDD+AD G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++KTSIMLG GET +QV +T+  +RAA VD +T GQYM+P+KRH+
Sbjct:  175 VLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQP-DVVSKTSIMLGLGETDEQVYATLKALRAADVDCLTLGQYMQPTKRHL 316          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIAS_RAT (Lipoyl synthase, mitochondrial OS=Rattus norvegicus GN=Lias PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 5.575e-40
Identity = 85/143 (59.44%), Postives = 106/143 (74.13%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++KTSIMLG GET +QV +TM  +RAA VD +T GQYM+P+KRH+
Sbjct:  175 VLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQP-DVVSKTSIMLGLGETDEQVYATMKALRAADVDCLTLGQYMQPTKRHL 316          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SCHPO (Lipoyl synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC8D2.15 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.242e-39
Identity = 82/143 (57.34%), Postives = 105/143 (73.43%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ H A+T++K+KE  P++L+EAL PDF G    V  VAKSGL+VFAHN+ETVEEL   VRD RA ++QSL VL   K   P   +TKTSIMLG GET  ++++T+  +    VDV+TFGQYMRP+KRH+
Sbjct:  170 VLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVETVEELTPFVRDRRATYRQSLSVLKHVKKTCP-HLITKTSIMLGLGETDAEILTTLKDLLEHNVDVVTFGQYMRPTKRHL 311          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIAS_BOVIN (Lipoyl synthase, mitochondrial OS=Bos taurus GN=LIAS PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.622e-39
Identity = 83/143 (58.04%), Postives = 105/143 (73.43%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDD+ D G+ HFA+TV  LKE  P +L+E L PDFRG+   + +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++KTSIMLG GE  +QV +TM  +R A VD +T GQYM+P+KRH+
Sbjct:  176 VLTSVDRDDMPDGGAEHFAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVRP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTKRHL 317          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIAS_HUMAN (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 8.050e-39
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   + +VA SGL+V+AHN+ETV ELQS VRD RANF QSL VL  AK   P   ++KTSIMLG GE  +QV +TM  +R A VD +T GQYM+P++RH+
Sbjct:  176 VLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLKHAKKVQP-DVISKTSIMLGLGENDEQVYATMKALREADVDCLTLGQYMQPTRRHL 317          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIP5_YEAST (Lipoyl synthase, mitochondrial OS=Saccharomyces cerevisiae GN=LIP5 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.342e-38
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+T+VDRDDL D G+ H A+TVRK+K+  PN L+E L  DFRG+   V  +A+ GL+V+AHN+ETVE L   VRD RA ++QSL VL  AK  VP+  +TKTSIMLG GET +Q+  T+  +R    DV+TFGQYMRP+KRHM
Sbjct:  220 VLTTVDRDDLVDGGANHLAETVRKIKQKAPNTLVETLSGDFRGDLKMVDIMAQCGLDVYAHNLETVESLTPHVRDRRATYRQSLSVLERAKATVPS-LITKTSIMLGLGETDEQITQTLKDLRNIQCDVVTFGQYMRPTKRHM 361          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPL (Lipoyl synthase OS=Legionella pneumophila (strain Lens) GN=lipA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.417e-37
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SGL+VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LTKTS+MLG GET ++++ TMD +RA  VD++T GQY++P+K H+
Sbjct:  137 VLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGLDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSLMLGLGETDEEIIRTMDDLRAHHVDILTLGQYLQPTKNHL 278          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEMY (Lipoyl synthase OS=Pseudomonas mendocina (strain ymp) GN=lipA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.285e-36
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ H+A  VR +KE  P +++EAL PDF G++  +  V  SGL VFA N+ETV+ L   VRD RA ++++L VL  AK + P   LTKTS+MLG GET ++++ TMD +RA GVD++T GQY++P++ H+
Sbjct:  138 VLTSVDRDDLEDGGASHYAACVRAIKENTPQVVVEALTPDFDGDHQAIERVVDSGLEVFAQNVETVKRLTHVVRDPRAGYEKTLKVLEHAKKHRPQ-VLTKTSLMLGLGETDEEILETMDDLRAIGVDILTLGQYLQPTRNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPH (Lipoyl synthase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lipA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.192e-36
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LTKTS+MLG GET ++++ TMD +R   VD++T GQY++P+K H+
Sbjct:  137 VLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSLMLGLGETDEEIIQTMDDLRTHHVDILTLGQYLQPTKNHL 278          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPA (Lipoyl synthase OS=Legionella pneumophila (strain Paris) GN=lipA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.192e-36
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LTKTS+MLG GET ++++ TMD +R   VD++T GQY++P+K H+
Sbjct:  137 VLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSLMLGLGETDEEIIQTMDDLRTHHVDILTLGQYLQPTKNHL 278          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIAS_MOUSE4.269e-4059.44Lipoyl synthase, mitochondrial OS=Mus musculus GN=... [more]
LIAS_RAT5.575e-4059.44Lipoyl synthase, mitochondrial OS=Rattus norvegicu... [more]
LIPA_SCHPO1.242e-3957.34Lipoyl synthase, mitochondrial OS=Schizosaccharomy... [more]
LIAS_BOVIN1.622e-3958.04Lipoyl synthase, mitochondrial OS=Bos taurus GN=LI... [more]
LIAS_HUMAN8.050e-3957.34Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
LIP5_YEAST2.342e-3856.64Lipoyl synthase, mitochondrial OS=Saccharomyces ce... [more]
LIPA_LEGPL4.417e-3751.75Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_PSEMY1.285e-3651.05Lipoyl synthase OS=Pseudomonas mendocina (strain y... [more]
LIPA_LEGPH2.192e-3650.35Lipoyl synthase OS=Legionella pneumophila subsp. p... [more]
LIPA_LEGPA2.192e-3650.35Lipoyl synthase OS=Legionella pneumophila (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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