CX291767

Overview
NameCX291767
Unique NameCX291767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9541 contig Ccv1_Contig9541:193..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.617e-16
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTECQYHSKTLVDFHREGEPSQ 320
            WVFGYGSL+W   F Y++K +GF+K + R F     DHRG P  P R  TL +  E   WG AY +  G E+E    EYL+  E   +    V FH + E  Q
Sbjct:    2 WVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQ 102          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.450e-14
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLE-RTECQYHSKTLVDFHRE 305
            WVFGYGSL+W   F Y EK++G+I  Y R F     DHRG P  P R  TL +  E   WG AY +  G E+E  A  YL+ R +  Y + T+V + ++
Sbjct:    2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKD 98          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.179e-14
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLE-RTECQYHSKTLVDFHRE 305
            WVFGYGSL+W   F Y EK++G I+ Y R F     DHRG P  P R  TL +  E   WG AY +  G E E  A  YL+ R +  Y + T+V + ++
Sbjct:    2 WVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKD 98          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.128e-14
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTEC---QYHSKTLVDFHREGEPSQ 320
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WG AY VRG  E+   A++YL   E     Y +K  V F+ +  P Q
Sbjct:   35 WIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQ 137          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.309e-14
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTECQYHSKTLVDFH 299
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WG AY +  G E+E  A  YL+  E   +  T V F+
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFY 95          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.074e-13
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTECQYHSKTLVDFH 299
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WG AY +  G E+E     YL+  E   +  T V F+
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFY 95          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.074e-13
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTECQYHSKTLVDFH 299
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WG AY +  G E+E     YL+  E   +  T V F+
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFY 95          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.074e-13
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTEC---QYHSKTLVDFHREGEPSQ 320
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WG AY V+G  E+   A++YL   E     Y +K  V F+ +  P Q
Sbjct:   34 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQ 136          
BLAST of CX291767 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = 3
Query:   12 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGAAYCVRGGPEKERLAMEYLERTECQYHSKTLVDFHREG--EPSQSAL 329
            W+FGYGSLVW P F+Y    +G+IK Y+R F      HRG  + P R  TL +  +   WG A+ V G   +E L    +       +    VDF   G  +P   AL
Sbjct:   14 WIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEESLKYLNVREAVRGGYLTRAVDFFPRGTNQPPVQAL 121          
The following BLAST results are available for this feature:
BLAST of CX291767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHAC2_DANRE2.617e-1641.75Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA2.450e-1442.42Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK4.179e-1442.42Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC1_MOUSE7.128e-1440.57Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC2_HUMAN9.309e-1441.67Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT2.074e-1340.63Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE2.074e-1340.63Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_HUMAN2.074e-1339.62Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC1_DANRE6.672e-1236.11Cation transport regulator-like protein 1 OS=Danio... [more]
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Properties
Property NameValue
Genbank descriptionC04004E06SK FlavFr1 Citrus clementina cDNA clone C04004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291767 ID=CX291767; Name=CX291767; organism=Citrus clementina; type=EST; length=347bp
CGGCACGAGGCTGGGTTTTTGGGTATGGATCATTGGTGTGGAACCCAGGG
TTTGAATATGATGAGAAAATTTTAGGCTTCATCAAGGACTACAGGCGCGT
GTTTGATCTTGCATGCATTGATCACAGGGGTACACCTCAACACCCGGCTA
GAACTTGCACGCTGGAAAAATCTCAAGAAACCATTTGTTGGGGTGCTGCT
TATTGTGTCCGAGGAGGTCCTGAAAAGGAAAGACTCGCTATGGAGTATTT
GGAACGAACAGAATGCCAGTACCACTCTAAGACCCTTGTAGACTTTCACA
GGGAAGGGGAGCCTTCACAGTCGGCTCTAACTGGGGTTATAGTTTTC
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