CX291768

Overview
NameCX291768
Unique NameCX291768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:1..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.379e-33
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS
Sbjct:   18 PLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVS 89          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.379e-33
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS
Sbjct:   68 PLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVS 139          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.379e-33
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS
Sbjct:   18 PLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVS 89          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.014e-32
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS
Sbjct:   73 PLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVS 144          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.014e-32
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS
Sbjct:   73 PLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVS 144          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 3
Query:  354 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS
Sbjct:   78 PLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVS 149          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3
Query:  360 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVS 78          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3
Query:  360 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVS 78          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.728e-21
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  360 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR AEF KLN E+LGVS
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVS 77          
BLAST of CX291768 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  360 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVS 569
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGIS 75          
The following BLAST results are available for this feature:
BLAST of CX291768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
BAS1_WHEAT2.379e-3394.442-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_ORYSJ2.379e-3395.832-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_HORVU2.379e-3394.442-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_SPIOL2.014e-3291.672-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1A_ARATH2.014e-3291.672-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1B_ARATH2.630e-3291.672-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
YCF42_PORPU7.670e-2475.71Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
YCF42_PORYE1.889e-2271.43Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
PRDX2_BOVIN2.728e-2174.29Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]
Y755_SYNY32.309e-2067.14Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionC04004E07SK FlavFr1 Citrus clementina cDNA clone C04004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291768 ID=CX291768; Name=CX291768; organism=Citrus clementina; type=EST; length=574bp
CACGAGGTTTTCAATCTCTTTAACTTCTTCATGAGACTGATGATTTTGAG
CAACAGATAGCCACACTTTGTTTTCGCCCCGTTCGTTGACTCCAGCTGAA
CAAGAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTG
CCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCT
TCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGG
CCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCC
GCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATA
CCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTT
CGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAAT
ATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACA
GAAATCACTGCTTTCAGTGACCGATATGCTGAATTTGAGAAGCTAAACAC
AGAGATATTGGGTGTCTCAACTGA
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