CX291770

Overview
NameCX291770
Unique NameCX291770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291770 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.402e-54
Identity = 109/159 (68.55%), Postives = 129/159 (81.13%), Query Frame = 3
Query:    3 KLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNIPQRAFDNFQFVNFTKIMSENKETSKKEAAFALAALMEIPLQYKATLSLHSF---NGELVAGPRTRLLPPP 470
            KL+GPTSFAPII+ A+ +VE S+ QYHVLVIIADGQVTR+ DT  GRLSPQEQ TV++IV AS  PLSI+LVGVGDGPWD +Q+FDDNIP RAFDNFQFVNFT+IMS+NK+ S+KE  FAL+ALMEIP QYKAT+ L+     NG +   P+   LPPP
Sbjct:  253 KLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNI---PQRIPLPPP 408          
BLAST of CX291770 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.094e-52
Identity = 106/156 (67.95%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    3 KLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNIPQRAFDNFQFVNFTKIMSENKETSKKEAAFALAALMEIPLQYKATLSLHSFNGELVAGPRTRLLPPP 470
            KL+GPTSFAPIID A+ IVE S  QYHVLVIIADGQVTR+ DT  G+LSPQEQ TV++IV AS  PLSI+LVGVGDGPWD +++FDDNIP RAFDNFQFVNFT+IM++NK  S KE  FAL+ALMEIP QYKAT+ L+         P    LPPP
Sbjct:  219 KLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPP 374          
BLAST of CX291770 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 8.154e-32
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 3
Query:    3 KLSGPTSFAPIIDAAIDIVEASNRQYHVLVIIADGQVTRNPDTPAGRLSPQEQATVNSIVAASHYPLSIILVGVGDGPWDSVQQFDDNIPQRAFDNFQFVNFTKIMSENKETSKKEAAFALAALMEIPLQYKATLSL 413
            ++SGPT+F P+ID AI+I +  +  YH+LVI+ADGQVT             E+    +I AASHYPLSII+VGVGDGPW+ + +FDDNIP+R FDNF FV+F K+M         +A+FAL ALMEIP QYKA   L
Sbjct: 7419 EMSGPTNFVPLIDRAIEICKEKH-SYHILVIVADGQVTN------------EKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVMF---NAPNADASFALNALMEIPDQYKAIKEL 7539          
The following BLAST results are available for this feature:
BLAST of CX291770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG1_ARATH3.402e-5468.55E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
RGLG2_ARATH1.094e-5267.95E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
CPNA2_CAEEL8.154e-3253.28Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC04004F03SK FlavFr1 Citrus clementina cDNA clone C04004F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291770 ID=CX291770; Name=CX291770; organism=Citrus clementina; type=EST; length=526bp
TAAAGTTGTCAGGTCCAACTTCATTTGCCCCAATTATTGACGCTGCAATT
GACATTGTGGAGGCAAGCAACAGACAGTATCATGTACTCGTCATTATTGC
TGATGGACAGGTAACTAGGAATCCTGACACACCTGCTGGAAGGTTAAGTC
CACAAGAACAAGCAACTGTTAACTCCATAGTTGCTGCTAGCCACTATCCT
CTCTCAATTATTTTGGTTGGGGTGGGTGATGGACCATGGGACTCAGTGCA
ACAATTTGATGATAACATTCCCCAGCGTGCGTTTGATAACTTCCAGTTTG
TCAACTTCACAAAAATAATGTCTGAGAACAAGGAAACATCAAAGAAGGAA
GCAGCATTTGCTCTTGCTGCCCTCATGGAAATACCATTACAGTACAAAGC
TACCCTTAGCCTTCATTCTTTCAATGGGGAATTAGTTGCTGGACCACGCA
CAAGACTACTTCCACCTCCACGTGAAGTGATTGATCATGATAATGTAGTA
AAATCAATTCCACACATGACAAACTT
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