CX291776

Overview
NameCX291776
Unique NameCX291776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291776_ssr221 microsatellite CX291776_ssr221:221..235. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7227 contig Ccv1_Contig7227:56..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 7.471e-72
Identity = 128/138 (92.75%), Postives = 128/138 (92.75%), Query Frame = 1
Query:   91 MATLLSPFSPSPLAKVSQIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG 504
            MATLLSPFSPSPLAKVSQIIDST          GRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG
Sbjct:    1 MATLLSPFSPSPLAKVSQIIDSTSSPSFSLFPLGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG 138          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.821e-29
Identity = 72/140 (51.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   91 MATLLSPFSPSPLAKVSQIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHPS-DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG 504
            M TLL PF PSPL  +      T             N   +K     H+R ++S  F +FL+L P S PE LD ++ W     D   +DVIIIGTGPAGLRLAEQVS ++ +KVCCVDPSPLS WPNNYGVWVDEFE +G
Sbjct:    1 METLLKPF-PSPLLSIP-----TPNMYSFKHNSTFPNPTKQKDSRKFHYRNKSSTHFCSFLDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLG 133          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.094e-26
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  199 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHP-SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG 504
            N  ++K     H R  +SK F +FL+L P S PE  D ++    P S R ++DVIIIG GPAGLRLAE VS ++ +KVCCVDPSPLS WPNNYGVWVDEFE++G
Sbjct:   31 NPTTKKKSRKCHFRNESSKLFCSFLDLAPISKPESFDVNISLVDPNSGRAQFDVIIIGAGPAGLRLAEHVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFENLG 133          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  268 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE 495
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE
Sbjct:   58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFE 132          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  268 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE 495
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE
Sbjct:   56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFE 130          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.112e-18
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  250 SKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE 495
            +K    LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + V  +DPSP   WPNNYGVWVDEFE
Sbjct:   52 AKSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEA-GLSVVSIDPSPKLIWPNNYGVWVDEFE 132          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.258e-17
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  268 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE 495
            L+L PE+  E LDF+LP +  S     D+ I+G GPAGL +A+QVS    + VC +DPSP   WPNNYGVWVDEFE
Sbjct:   57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKLIWPNNYGVWVDEFE 131          
BLAST of CX291776 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  268 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDI 501
            L+L PE   E L+FDLP + PS  +  D+ ++G GP     +  +     + V  +DP+P   WPNNYGVWVDEFED+
Sbjct:   62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLGG--GLSVVSIDPNPKLIWPNNYGVWVDEFEDM 137          
The following BLAST results are available for this feature:
BLAST of CX291776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCS_CITSI7.471e-7292.75Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
CCS_CAPAN7.821e-2951.43Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
NXS_SOLTU8.094e-2657.69Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
LCYB_SOLLC1.635e-1855.26Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_CAPAN1.635e-1855.26Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC8.112e-1852.44Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_ARATH5.258e-1755.26Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_NARPS1.583e-1343.59Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
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Properties
Property NameValue
Genbank descriptionC04004G01SK FlavFr1 Citrus clementina cDNA clone C04004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291776 ID=CX291776; Name=CX291776; organism=Citrus clementina; type=EST; length=505bp
TTCTTCCTCTGAGATTCCTCTGTTTCTTTTATCTCAATTATTGACTCCTC
TCCACTTTCTTTTGTCTTTCTCATTTCTCTGCGCTCTGGCATGGCAACTC
TTCTTAGCCCGTTTTCTCCTTCTCCTTTAGCTAAAGTTTCGCAAATAATT
GATTCAACATCATCACCTTCATTTTCCCTATTTCCATTAGGCCGCCAAAA
TGCATGTTCAAGAAAGGCGGATCATCATCATCATCACAGGATCCGGACAA
GCAAGTTTGGTAACTTCCTAGAGTTGACACCGGAGTCGGTACCTGAATTC
TTAGACTTTGATCTCCCCTGGTTTCATCCGTCCGATCGTATTCGATATGA
CGTGATCATCATTGGCACTGGACCAGCCGGCCTCCGTCTAGCTGAGCAAG
TCTCATCGCGTCATAGTGTCAAGGTATGTTGTGTTGATCCTTCACCTCTT
TCTACGTGGCCTAACAACTATGGAGTTTGGGTTGATGAGTTTGAAGACAT
AGGAC
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