CX291777

Overview
NameCX291777
Unique NameCX291777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 1.653e-95
Identity = 166/188 (88.30%), Postives = 182/188 (96.81%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AICSGIFNDLGSGSNVD+CVITKGHKEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL
Sbjct:   71 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPL 258          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 3.117e-94
Identity = 163/188 (86.70%), Postives = 182/188 (96.81%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRV+TALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV ++ICSGIFNDLGSGSNVD+CVITKG+KEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL
Sbjct:   71 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPL 258          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.146e-62
Identity = 118/188 (62.77%), Postives = 142/188 (75.53%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            EKIHY+A NIYCCGAGTAADTE+ T ++SS+L+LH+  TG+++RV+TALT+LK+ LF YQG++ AAL+LGG+D  GP LHTIYPHGSTD LP+ TMGSGSLAAMA+FE+KYK  +TK+E I LV +AI SGIFNDLGSGSNVDV VI       LRN+  PN R F N         T VL   I PL
Sbjct:   66 EKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSGVTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAPL 253          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.110e-58
Identity = 110/187 (58.82%), Postives = 140/187 (74.87%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E   LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  KITPL
Sbjct:   76 KIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPL 262          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 109/187 (58.29%), Postives = 141/187 (75.40%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  K+TPL
Sbjct:   76 KIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPL 262          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.018e-58
Identity = 109/187 (58.29%), Postives = 140/187 (74.87%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR   +PN +     +       T VL  K+TPL
Sbjct:   76 KIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPL 262          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.047e-57
Identity = 109/187 (58.29%), Postives = 140/187 (74.87%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  QLV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  K+T L
Sbjct:   76 KIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTAL 262          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.333e-57
Identity = 110/188 (58.51%), Postives = 142/188 (75.53%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLT-KITPL 564
            KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +       Y   K T  +LT K+T L
Sbjct:   76 KIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKG-TRFGRYRCEKGTNAVLTEKVTTL 262          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.574e-52
Identity = 103/182 (56.59%), Postives = 135/182 (74.18%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 546
            K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ ES +K+ LTK+E I+L  DAI +GI+NDLGSGSNVDVCV+  G   EYLRN+L PN R     K Y FP+ T  +L
Sbjct:   62 KLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 242          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.036e-50
Identity = 97/182 (53.30%), Postives = 132/182 (72.53%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 546
            +K+H ++PNI+C GAGTAADTE VT M+SS ++LH  +T R+ RVVTALT+LK+HLF YQG++ A LVLGG DC GPHL TI  HGS+D LP+  +GSGSLAA+++ E+KY+  L + E ++LV +AI +GIFNDLGSGSN D+ VI +      R +  PN R    +K Y++ + T  +L
Sbjct:   67 KKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSK-YTYDRGTTAVL 247          
The following BLAST results are available for this feature:
BLAST of CX291777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PSB7B_ARATH1.653e-9588.30Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH3.117e-9486.70Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_DICDI3.146e-6262.77Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_HUMAN2.110e-5858.82Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB7_RAT3.599e-5858.29Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE8.018e-5858.29Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_PIG1.047e-5758.29Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_BOVIN2.333e-5758.51Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_YEAST6.574e-5256.59Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_SCHPO8.036e-5053.30Probable proteasome subunit beta type-7 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionC04004G03SK FlavFr1 Citrus clementina cDNA clone C04004G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291777 ID=CX291777; Name=CX291777; organism=Citrus clementina; type=EST; length=568bp
GAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAAC
TGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGT
TACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACT
CTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTT
GGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATC
CACATGGTTCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCT
CTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCTGACTAA
AGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTATATTCA
ATGACTTGGGAAGTGGAAGCAATGTTGATGTCTGTGTAATTACCAAGGGG
CACAAAGAGTACCTGAGGAACCACCTTTTGCCAAATCCTCGCACCTTTGT
CAATGCCAAAGGCTATTCTTTCCCTAAGAAGACAGAGGTCCTCTTGACGA
AGATCACCCCGCTGAGGG
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