CX291779

Overview
NameCX291779
Unique NameCX291779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291779_ssr113 microsatellite CX291779_ssr113:113..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1039 contig Ccv1_Contig1039:27..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291779 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.513e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  145 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 426
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CX291779 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  145 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 426
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLL 90          
BLAST of CX291779 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 1
Query:  145 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFL 426
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLL 98          
The following BLAST results are available for this feature:
BLAST of CX291779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU1.513e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI4.265e-1245.74Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.764e-1139.80Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC04004G05SK FlavFr1 Citrus clementina cDNA clone C04004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291779 ID=CX291779; Name=CX291779; organism=Citrus clementina; type=EST; length=430bp
CACGAGGGGATTTTCGCGCTACGAAGAGGGAAGTTTCTTTAGCTGCTGTT
GAAGGCTTTTCGATAGAAAGAATAGAAGGAAATTGCTTTCTGCAGCAGCG
TTAAGATCTCTTATCATCATCATCATCCCACATAACTAAGAAAAATGGCT
CGCTCTTTCTCAAACGCTAAGCTTTTCTCTGCTTTCGTCGCTGACGGAAT
CTCTAACGCCATCTACAAAAGAGGATACTCGGCGGCATCACAAGGCGCTG
TGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCGATGTTGAAGAAA
CCAGCAGAAGAGATGACAGGATCCAGTGAGAAGGTCTCGTGGGTCCCAGA
CCCAGTCACTGGTGTCTACAGGCCGGAGAATCTCGCCAACGAGCTCGATG
GGGCCGACCTCAGAGCCATGTTCTTGAAGC
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