CX291783

Overview
NameCX291783
Unique NameCX291783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length336
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15406 contig Ccv1_Contig15406:539..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291783 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.732e-27
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3
Query:   12 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 185
            DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CX291783 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.650e-24
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 3
Query:   12 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 185
            DGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  294 DGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CX291783 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.322e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3
Query:   12 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 185
            DGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  291 DGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CX291783 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.545e-15
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   12 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 167
            DGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  297 DGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CX291783 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   12 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 167
            DGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  294 DGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
The following BLAST results are available for this feature:
BLAST of CX291783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
THI4_CITSI9.732e-27100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL2.650e-2491.38Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.322e-2081.03Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE8.545e-1573.08Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.234e-1369.64Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionC04004H03SK FlavFr1 Citrus clementina cDNA clone C04004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291783 ID=CX291783; Name=CX291783; organism=Citrus clementina; type=EST; length=336bp
TCGGCACGAGGGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATG
ATGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCA
GCCGAATGCATTAGACGGTACATATGTGGGAGGTGTTCACCCTGAGCTGA
TCTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGGTTAATTTGATAAT
AACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAA
AAAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATG
AGATGATGTTGTGAGGTTTTGTGAATAAAGTGTTTG
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