CX291784

Overview
NameCX291784
Unique NameCX291784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig381 contig Ccv1_Contig381:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291784 vs. ExPASy Swiss-Prot
Match: FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.916e-50
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 2 
Query:   14 GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLLTISPALQIKPEGLLLNA 394
            GLY+++ A+C+SNL S+SLWG+T ITD GVVQLISR SSLQHLNIGGTFITDESL+AIA  C QLK+I +W CR VT  GLL LVNKC +LESIN+WGTR+P+DCFI LLTISPALQIKP  LLLNA
Sbjct:   92 GLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCRKLESINLWGTRVPVDCFIALLTISPALQIKPMELLLNA 218
The following BLAST results are available for this feature:
BLAST of CX291784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB302_ARATH4.916e-5074.80F-box protein At5g67140 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC04004H05SK FlavFr1 Citrus clementina cDNA clone C04004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291784 ID=CX291784; Name=CX291784; organism=Citrus clementina; type=EST; length=667bp
ATTCGGCACGAGGGGACTGTACAGAATGTCTTTTGCTAAGTGTATCAGCA
ACCTCACATCCATATCCCTATGGGGTTTGACCGGGATCACGGACAAAGGT
GTTGTTCAGCTGATATCAAGAGCTAGTTCTTTGCAACACCTGAATATTGG
CGGCACATTTATCACTGATGAATCTTTGTATGCAATTGCAAATAGCTGTC
CACAACTAAAGAGTATCGTCCTGTGGAGCTGCCGTCAGGTTACAGGGAAT
GGGCTTCTTTTCCTAGTAAATAAATGTGGCAGACTTGAGTCTATCAATGT
ATGGGGAACCAGACTTCCTTTAGACTGCTTCATTGGCTTGCTTACAATTA
GTCCTGCTCTTCAGATAAAGCCTGAAGGACTGCTCTTAAATGCTGGAGTT
GCGTCTATGTTGCCTGTTGCATAAGGTGCCAATTCATGGTTGCCTTTCTT
TTGCTCTTTGTAGAGGTTATTTGTTTCCCTTTGTATTTTCATATTCATAA
TAAAATTTGTAATCTTGATGAAAGAAACCTATTGTTTCAACTCTGGCTTG
TACAGTGGCAAAGCAATTGTATTCTTTTGTGCAAATGTATCAAGATAGAA
GAATAAATTTGTATGTGGATATTACAACCCCAAGCTAGGAAATTTAATAG
CAATGACACATGCTCAG
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