CX291785

Overview
NameCX291785
Unique NameCX291785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length180
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig492 contig Ccv1_Contig492:170..349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291785 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 LNAASTITCEHATIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEYRRTQCNCVK 180
            ++ A  ITC   T  L PCI Y   GGAV PACC+GIR +N  ++TT  R+T CNC+K
Sbjct:   19 VSVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLK 76
[Close]
BLAST of CX291785 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.640e-11
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 LNAASTITCEHATIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEYRRTQCNCVK 180
            ++ A  ITC   +  L PCI+Y   GGAV PACC+GI+ +N  +KTT  R+  CNC+K
Sbjct:   19 VSVAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLK 76
The following BLAST results are available for this feature:
BLAST of CX291785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NLTP_MALDO1.942e-1151.72Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PYRCO9.640e-1148.28Non-specific lipid-transfer protein OS=Pyrus commu... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04004H06SK FlavFr1 Citrus clementina cDNA clone C04004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291785 ID=CX291785; Name=CX291785; organism=Citrus clementina; type=EST; length=180bp
GCTCCCCTGAATGCAGCATCAACAATAACATGCGAGCATGCGACAATCTG
GTTGACACCATGCATCAGCTATGGCGTATTGGGTGGGGCTGTACAACCAG
CTTGTTGCGATGGCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAA
TATAGAAGGACCCAATGTAATTGCGTGAAG
back to top