CX291786

Overview
NameCX291786
Unique NameCX291786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12421 contig Ccv1_Contig12421:820..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291786 vs. ExPASy Swiss-Prot
Match: DOM3Z_ARATH (Protein Dom3z homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.055e-86
Identity = 149/199 (74.87%), Postives = 172/199 (86.43%), Query Frame = 2 
Query:    2 DERFVSEFKLSRSEETLSRKVVAFQEPCELAQYSRVEGGDVYFDDRSLRLFKRLISEDVGADLNEGFDTFIEKKELGSEGFGDLLSCIRNRNIPLQNMHFVTFRNNLNKILATAYIRNEAWAMGVHKRNGVVYLDVHKVQERPKSELDRRRCYWGYCFESLATEDPRRADGEGIHHIDANVEFCAVMKTKLGAHRLFDG 598
            DERFVSE KLS+S+ETL+RK   FQEPCEL  YSRVEGG+V +DD+ LRLFKR I E++GADLN+G+DTFIEKK+LGSEGFGDLL  IR +NI L N+HFVTFRNNLNKIL  AY R+E W MGVHKRNG +YLDVHK+ ERP+S+LDRRRCYWGYCFESLATEDP RA GE IHH+DANVEFC+V++TKLGAHR+  G
Sbjct:  194 DERFVSELKLSKSKETLARKQTNFQEPCELTCYSRVEGGEVIYDDQGLRLFKRHIGEEIGADLNQGYDTFIEKKDLGSEGFGDLLGSIRAKNISLDNIHFVTFRNNLNKILGAAYNRHEPWEMGVHKRNGTIYLDVHKLPERPQSDLDRRRCYWGYCFESLATEDPGRAYGEEIHHVDANVEFCSVVRTKLGAHRVMMG 392
The following BLAST results are available for this feature:
BLAST of CX291786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DOM3Z_ARATH2.055e-8674.87Protein Dom3z homolog, chloroplastic OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC04004H07SK FlavFr1 Citrus clementina cDNA clone C04004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291786 ID=CX291786; Name=CX291786; organism=Citrus clementina; type=EST; length=601bp
GGATGAACGATTTGTTTCTGAATTTAAGCTTTCAAGGAGTGAAGAAACTT
TGTCTAGAAAAGTTGTTGCTTTTCAAGAGCCATGTGAGCTTGCACAATAT
AGTCGAGTAGAAGGTGGTGATGTCTACTTCGATGATCGCAGCTTGAGGCT
TTTCAAACGTCTCATTTCTGAGGATGTTGGAGCTGATCTAAATGAAGGTT
TTGATACTTTTATTGAGAAAAAAGAGTTGGGCTCTGAGGGATTTGGCGAC
TTGCTTTCTTGCATAAGAAACAGAAATATCCCGCTTCAGAACATGCATTT
TGTGACTTTCCGTAACAATCTTAACAAGATACTAGCTACTGCTTATATCC
GAAATGAGGCTTGGGCAATGGGAGTCCATAAAAGGAATGGGGTCGTCTAT
CTTGATGTGCACAAAGTACAAGAAAGGCCAAAAAGTGAGTTGGATCGCCG
AAGATGTTACTGGGGTTATTGTTTCGAGAGCCTTGCCACTGAAGATCCTA
GAAGAGCTGACGGAGAAGGGATACATCATATTGATGCCAATGTTGAATTC
TGCGCTGTGATGAAAACCAAATTAGGGGCTCATCGTCTTTTTGATGGGTG
C
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