CX291788

Overview
NameCX291788
Unique NameCX291788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13510 contig Ccv1_Contig13510:37..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 3.918e-99
Identity = 178/192 (92.71%), Postives = 184/192 (95.83%), Query Frame = 3
Query:   63 MATGT---ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            MAT T   A  PRQLSQKEADIQMMLAA+VHLGTKNCDFQMERY+FKRRNDGIYIINLGKTWEKLQ+AARVIVAIENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    1 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 192          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 8.170e-97
Identity = 173/184 (94.02%), Postives = 178/184 (96.74%), Query Frame = 3
Query:   78 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            AT  R LSQKE DIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKLQ+AARVIVAIENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    2 ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 4.483e-95
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 3
Query:   78 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            A+  R+LS  EADIQMM AAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL +AARVIV+IENP DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    2 ASGARELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLMLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 5.855e-95
Identity = 169/186 (90.86%), Postives = 179/186 (96.24%), Query Frame = 3
Query:   75 TATAP-RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            T TAP RQL+QKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTW+KL +AAR+IVAIEN  DIIVQSARPYGQRAVLKFA+YT AHAIAGRHTPGTFTNQ+QTSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    3 TTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQM 188          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 9.987e-95
Identity = 168/188 (89.36%), Postives = 180/188 (95.74%), Query Frame = 3
Query:   66 ATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            A G ATA RQ+S+KEADIQMML+A+VHLGTKNC++QMERYVFKRR+DGIYIINLGKTW+KLQMAARVIVAIENP DIIVQSARPYGQRAVLKFA+YT  +AIAGRHTPGTFTNQMQTSF+EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    3 ANGVATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQM 190          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 344.739 bits (883), Expect = 2.225e-94
Identity = 168/189 (88.89%), Postives = 178/189 (94.18%), Query Frame = 3
Query:   63 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            MAT  + +  QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIVAIENP DIIVQSARPYGQRAVLKFA+YT A+AIAGRHTPGTFTNQMQTSF+EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    1 MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQM 189          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 9.348e-93
Identity = 166/184 (90.22%), Postives = 173/184 (94.02%), Query Frame = 3
Query:   78 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            A    QLSQKEADI+MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWEKL MAARVIVAIENP DIIVQSARPYGQRAVLKFA+YT A+AIAGRHTPGTFTNQMQTSF+EPRLLILTDPRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQM
Sbjct:    3 ANGSTQLSQKEADIKMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLMMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQM 186          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_CHLRE (40S ribosomal protein SA OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_126059 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.227e-76
Identity = 137/178 (76.97%), Postives = 158/178 (88.76%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LSQKE DIQMMLAA+ HLGTKNC +QMERY+++RR DGIYIINL KT+EKLQMAAR+IVAIENP DI V SARPYGQRAV KFA+Y    ++AGRHTPGTFTNQ+Q +F EPRLLILTDPRTDHQP+KE++  NIPTIAFCDTDSP+ +VD+ IPANNKGKHSIG L++LLARMVL+M
Sbjct:    3 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDGIYIINLEKTYEKLQMAARIIVAIENPQDICVLSARPYGQRAVFKFAQYLGCKSMAGRHTPGTFTNQIQKAFEEPRLLILTDPRTDHQPVKESSYMNIPTIAFCDTDSPLTHVDVAIPANNKGKHSIGVLYFLLARMVLEM 180          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_OSTTA (40S ribosomal protein SA OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 137/179 (76.54%), Postives = 155/179 (86.59%), Query Frame = 3
Query:   93 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            Q+SQKEADI MMLAA  HLGTKN DFQMERYV+KRR DGI+IINLGKTW+KL +AARVIVA+ENP D+I Q+ARPYGQRAVLKFA+YT A A+AGRHTPGT+TNQ    F EPR+L++TDPRTD QPI E A  NIPTIAFCDTDSP++ VDI IPANNK K SIGCL++LLARMVLQM
Sbjct:    4 QMSQKEADIAMMLAAGCHLGTKNVDFQMERYVWKRRADGIHIINLGKTWDKLMLAARVIVAVENPQDVIAQAARPYGQRAVLKFAQYTGAKALAGRHTPGTYTNQKDAVFAEPRVLVVTDPRTDAQPISETAFVNIPTIAFCDTDSPLKNVDIAIPANNKAKQSIGCLYYLLARMVLQM 182          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_OSTLU (40S ribosomal protein SA OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12355 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.313e-75
Identity = 136/179 (75.98%), Postives = 155/179 (86.59%), Query Frame = 3
Query:   93 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            Q+SQKEADI MMLAA  HLGTKN DFQMERYV+KRR DGI+IINLG+TW+KL +AAR+IVA ENP D+I Q+ARPYGQRAVLKFA+YT A AIAGRHTPGT+TNQ    F EPR+LI+TDPRTD QPI E A  N+PTIAFCDTDSP++ VD+ IPANNK KHSIGCL++LLARMVLQM
Sbjct:    4 QMSQKEADIAMMLAAGCHLGTKNVDFQMERYVWKRRADGIHIINLGRTWDKLMLAARIIVACENPQDVICQAARPYGQRAVLKFAQYTGAKAIAGRHTPGTYTNQKDAIFAEPRVLIVTDPRTDAQPISETAYVNLPTIAFCDTDSPLKNVDVAIPANNKAKHSIGCLYYLLARMVLQM 182          
The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_SOYBN3.918e-9992.7140S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_VITVI8.170e-9794.0240S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA_DAUCA4.483e-9591.8540S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA_CICAR5.855e-9590.8640S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA2_ARATH9.987e-9589.3640S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA1_ARATH2.225e-9488.8940S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA_BRANA9.348e-9390.2240S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
RSSA_CHLRE1.227e-7676.9740S ribosomal protein SA OS=Chlamydomonas reinhard... [more]
RSSA_OSTTA1.356e-7576.5440S ribosomal protein SA OS=Ostreococcus tauri GN=... [more]
RSSA_OSTLU2.313e-7575.9840S ribosomal protein SA OS=Ostreococcus lucimarin... [more]

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Properties
Property NameValue
Genbank descriptionC04005A01SK FlavFr1 Citrus clementina cDNA clone C04005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bp
GGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTT
TGAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTC
TCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGG
GTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGA
AACGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACA
GATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTG
TCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAG
TACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTAC
CAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAG
ATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATT
CCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATAT
TGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCT
GGCTTTTGGCTAGAATGGTTCTCCAGATG
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