CX291801

Overview
NameCX291801
Unique NameCX291801
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length316
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291801 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.208e-31
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 2 
Query:    5 QENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKV 250
            +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V
Sbjct:   13 KEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQV 94
[Close]
BLAST of CX291801 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.208e-31
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 2 
Query:    5 QENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKV 250
            +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V
Sbjct:   13 KEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQV 94
[Close]
BLAST of CX291801 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.481e-27
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:    5 QENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKV 250
            +E LP  L S +E P LFDGT RLY+ Y CPFAQRAWI RN+KGLQDKI+LV ++LQD+PAWYKEKVY    +P+LEHNGK+
Sbjct:   12 KEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKI 93
[Close]
BLAST of CX291801 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.309e-27
Identity = 51/82 (62.20%), Postives = 68/82 (82.93%), Query Frame = 2 
Query:    5 QENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKV 250
            +E+LPP L S ++ PP+FDGT RLY+ Y CPFAQRAW+TRN KGLQDK++LV ++LQD+PAWYK+KVY    +P+LEH+ +V
Sbjct:   12 KESLPPALGSTSQPPPVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAIDLQDKPAWYKDKVYAQGTVPSLEHDSEV 93
The following BLAST results are available for this feature:
BLAST of CX291801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ2.208e-3171.95Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI2.208e-3171.95Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.481e-2767.07Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE4.309e-2762.20Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC04005B10SK FlavFr1 Citrus clementina cDNA clone C04005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291801 ID=CX291801; Name=CX291801; organism=Citrus clementina; type=EST; length=316bp
AGCGCAAGAGAATCTTCCTCCACCGTTGGATTCGAAGGCCGAGCTACCAC
CTCTGTTCGATGGAACTCCCAGGTTGTACATGTCTTACTCGTGCCCATTT
GCTCAGCGTGCGTGGATCACCAGGAACTACAAGGGATTACAAGACAAGAT
TAAGTTAGTTCCACTGAACCTCCAAGATAGGCCCGCTTGGTACAAGGAGA
AGGTTTATCCTGTTAACAAGATTCCAGCACTGGAGCACAATGGCAAAGTT
AGCGTTGTATGTTGTGCTATCATTAATAAAAATTGATGCTATTTGGTAAA
AAAAAAAAAAAAAAAA
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