CX291820

Overview
NameCX291820
Unique NameCX291820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig390 contig Ccv1_Contig390:12..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291820 vs. ExPASy Swiss-Prot
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.289e-43
Identity = 89/134 (66.42%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:  205 MVGEATNLSSEDLNLCFEKXXXXXXXXXXXXXVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDL 606
            MV E    + ++LNLCFE              +KM+GV+I+EWKDIP+ELL++IL+LVD+ TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLEDNAVEAIAN CH+L
Sbjct:    1 MVSEGA--TRKELNLCFEN-------------MKMEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHEL 119
The following BLAST results are available for this feature:
BLAST of CX291820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL5_ARATH1.289e-4366.42F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC04005E01SK FlavFr1 Citrus clementina cDNA clone C04005E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291820 ID=CX291820; Name=CX291820; organism=Citrus clementina; type=EST; length=606bp
ATTAAATTGAGCCCAAAAAAGAAGGAAAAAAAACTTTTGCAGTTTCTCTT
TGGAATTGAGCCTAATTCAAGCAAATTGTAATTTATCATATTTTGTTCAA
AAGGGTATCTCTGTTGATTCTAAATAAAGCAGATATAAAGGAATCGGCAA
TCGTAAGAAGGCAAACAAATTGTATACTTCAGTTAAGGCGGTGCTGTGTC
AAGAATGGTGGGAGAAGCAACAAATTTGAGTAGTGAGGACTTGAACTTGT
GCTTTGAGAAGATGATGATGGCTGGTGCTGGTGCTGATAGAGCTGGCGGT
GTGAAAATGGATGGCGTGGTGATCACTGAGTGGAAAGATATTCCCATGGA
GCTACTGTTGAGGATTCTTTCGCTTGTTGATGAACCAACGGTGATTGTGG
CTTCTGGGGTTTGTAGTGGATGGAGGGATGCCATTTGCTTGGGTCTCACC
CATCTGTCCCTCTCTTGGTGCAAGAACAACATGAACAACTTGGTTCTGTC
TCTTGCTCCTAAGCTCACGAAATTGCAAACTTTGGTGCTGCGTCAAGACA
AGCCACAACTTGAGGATAACGCAGTTGAGGCTATAGCAAATTCTTGTCAT
GATTTG
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