CX291825

Overview
NameCX291825
Unique NameCX291825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig386 contig Ccv1_Contig386:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.929e-57
Identity = 104/134 (77.61%), Postives = 117/134 (87.31%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 503
            MGGE KV+TLAEVS HN+ KDCWL+I GKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSA+AM+DE+YVGDIDS+T+          QPHYNQDKT EF++KLLQFLVPL+ILG+A GIRFYTK +
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.741e-55
Identity = 100/134 (74.63%), Postives = 115/134 (85.82%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 503
            MGG+ KV+TLAEVS HN+ KDCWLII GKVY+VTKFL+DHPGG EVLLSATGKDATDDFED+GHSSSA+AM+DE+YVGDIDSST+          QPHYNQDKT EFI+KLLQFLVPL+ILG+A G+ FYTK +
Sbjct:    1 MGGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.705e-52
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 3
Query:  114 GKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 503
            GK++TLAEV+ HN+ KDCWLII GKVYDVTKFL+DHPGGD+VLLSATGKDATDDFED+GHSSSAKAM+DE+YVGDIDSS++          QP YN DKT EF+IKLLQFLVPL+IL  A+GIRFYTKS+
Sbjct:    2 GKIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.253e-52
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 3
Query:  117 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 500
            KVYTL EV+ HN + DCWLII GKVY+V+KFL+DHPGGD+VLLS+TGKDATDDFEDVGHS++A+AMMDE+YVGDID+ST+          QPHYNQDKTPEFIIK+LQFLVPL ILGLAV IR YTKS
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 500
            MG E K++TL+EVS HN   DCW++I GKVY+VTKFL+DHPGGD+VLLS+TGKDATDDFEDVGHS SA+ MM+++YVG+ID +T+          QPHYNQDKT EFIIKLLQFLVPL ILGLAVGIR YTKS
Sbjct:    1 MGDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.467e-50
Identity = 98/134 (73.13%), Postives = 110/134 (82.09%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 503
            MGG  KVY+LAEVS H+   DCWL+I GKVYDVTKFLDDHPGG +VLLS+T KDATDDFED+GHSSSA+AMMDE  VGDIDSST+          QP YNQDKTP+FIIKLLQFLVPL+ILG+AVGIRFY K +
Sbjct:    1 MGGS-KVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.588e-47
Identity = 89/132 (67.42%), Postives = 106/132 (80.30%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 497
            M  + KV +  EVS HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MMD++++G+IDSS+V          QP YNQDKTPEFIIK+LQFLVP+LILGLA+ +R YTK
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.686e-47
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 3
Query:  102 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 497
            M  E KV    EVS HN  KDCWLII GKVYDVT F+DDHPGGDEVLLS+TGKDAT+DFEDVGHS +A+ MM+++Y+G+IDSSTV          QP YNQDKTPEF+IK+LQFLVP+LILGLA+ +R YTK
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.534e-21
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  111 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYN-QDKTPEFIIKLLQFLVPLLI 461
            E K +T AEV+ HN  KD WL+I   +YDVT FL++HPGG+EVL+   GKDAT++FEDVGHS+ A+ MM ++ +G++  S            +P ++ + +T E  +K   +LVPL++
Sbjct:    5 ETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES---ERTSVAQKSEPTWSTEQQTEESSVK--SWLVPLVL 117          
BLAST of CX291825 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  123 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 350
            Y L EV+  N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   23 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
The following BLAST results are available for this feature:
BLAST of CX291825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB5_TOBAC2.929e-5777.61Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC2.741e-5574.63Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_BOROF3.705e-5274.62Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_ORYSJ8.253e-5275.00Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB52_ARATH2.401e-5170.68Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE3.467e-5073.13Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB51_ARATH3.588e-4767.42Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB4.686e-4768.18Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_DROME7.534e-2143.22Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5B_HUMAN1.285e-2056.58Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC04005F02SK FlavFr1 Citrus clementina cDNA clone C04005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291825 ID=CX291825; Name=CX291825; organism=Citrus clementina; type=EST; length=639bp
CACCCTTTTCCTTTATGTTCCCAAATCCGCTCCTCCTGGTGCTCACCTAC
TGGGCATAAAAGTTTCACGTTTTTCCCTGAAAAATCTGACCTTTTTTACA
AATGGGCGGAGAGGGCAAGGTATACACTTTGGCTGAGGTCTCTGGGCACA
ACGACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTATATGATGTG
ACAAAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATTGTTGTCTGC
CACAGGAAAGGATGCGACTGATGACTTTGAGGATGTTGGTCACAGTAGCA
GTGCAAAAGCGATGATGGATGAATTCTATGTGGGTGACATTGATTCATCA
ACCGTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCCTCACTACAA
CCAAGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGTTCCTAGTTC
CTCTGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTATACCAAATCC
GCTTAATGATACCTTGCAAGATAAAAATACATTTACAATAAATCTATATC
CGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTATTATCACCAG
AAAATGTAGGGTTCTTTATCTTTAAAAAAAAAAAAAAAA
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