CX291844

Overview
NameCX291844
Unique NameCX291844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.917e-60
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            VE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   33 VEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.283e-60
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.283e-60
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   33 VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.165e-59
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   33 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.871e-53
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            VE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   33 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.871e-53
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            VE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   33 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.055e-53
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            VE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   33 VEEMITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   33 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   33 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of CX291844 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 96/119 (80.67%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:  147 VEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 503
            V++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   33 VKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of CX291844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_SOYBN1.917e-6097.4840S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS132_ARATH7.283e-6096.6440S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH7.283e-6096.6440S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_PEA6.165e-5995.8040S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ3.871e-5389.0840S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ3.871e-5389.0840S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_MAIZE5.055e-5389.0840S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS13_XENLA8.923e-5080.6740S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT8.923e-5080.6740S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE8.923e-5080.6740S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]

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Properties
Property NameValue
Genbank descriptionC04005H10SK FlavFr1 Citrus clementina cDNA clone C04005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291844 ID=CX291844; Name=CX291844; organism=Citrus clementina; type=EST; length=691bp
CGAGGATGATAATGTACACTGGGGATGTCCGTTAGAAAGTATCTCACTTG
AAAGTATTTTCAATTTTTTTTTGGGTGAATGTTGTAGCTTTAATATATTT
GCCTTCGTTTCTGATTTAAAGTTTTTTTTTGTTTTGAATCTTTCAGGTGG
AAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCATCTCAAATT
GGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAGAGTGTTAC
TGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGCTCCTGAAA
TTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTATTAGGAAG
CATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGGTTGATCTT
GGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAAGACAAAGA
AGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCACTCTCGTG
GCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAGGATCGTAT
CTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGGTATTCCTTTTA
TAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGCGGAAATGA
CGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGG
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