CX291850

Overview
NameCX291850
Unique NameCX291850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 3.716e-95
Identity = 167/220 (75.91%), Postives = 191/220 (86.82%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSS-----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGL-FKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            KNLYLSCDPYMR+RM     PD SS     + PG PI G+GV++V++SGHP++KKGDL+WG  GWEEYS+I     + FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PKKGE +YVSAASGAVGQLVGQFAK+MGCYVVGSAGS+EKV+LLK KFGFDDAFNYKEE+DL AALKRCFP+GID+YFE+VGGKMLDAVLLNM  HGRIA CGMISQYN
Sbjct:   43 KNLYLSCDPYMRSRMG---KPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYN 259          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.108e-94
Identity = 162/219 (73.97%), Postives = 189/219 (86.30%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSS----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKN-PQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            KNLYLSCDPYMR RM    DP  ++    +TPG PI+G+GV+++++SGHP++KKGDL+WG   WEEYS+I       FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PK+GE +YVSAASGAVGQLVGQ AK+MGCYVVGSAGS+EKV+LLK KFGFDDAFNYKEE+DL AALKRCFP GIDIYFE+VGGKMLDAVL+NM +HGRIA CGMISQYN
Sbjct:   44 KNLYLSCDPYMRIRMG-KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYN 261          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.096e-46
Identity = 110/221 (49.77%), Postives = 137/221 (61.99%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI-KNPQGLFKIHHTD--VPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            KN+Y S DPY+R RM   Q P  +S+ P    G P     VAKVV S   ++K G  V   +GWEEY+ + K   G  +  +    +PL  + G LGMP  TA+ G   I  PK GE IY+SAASGAVGQ+ GQ AK MG +VVGS GS EK ++  +  G+D  FNYK+E+    AL R  P+GIDIYFE+VGG+ +DAVL NM L GRI  CG ISQYN
Sbjct:   49 KNIYTSVDPYLRMRM---QSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPF-KALPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYN 264          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.340e-44
Identity = 97/214 (45.33%), Postives = 130/214 (60.75%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            K LY+S DPYMR RM   +      F     + G  +A+VV  G+   KKGD+V G   W+E+S +     L KI  +  P S Y GILGM G+TA+ G  +I  PK+GE + VS A+GAVG  VGQ AK+ G  VVG AGS EK++ LK +  FD+A NYK  +D+  AL+   P+G+D+YF++VGG + DAV+  +    RI  CG IS YN
Sbjct:   41 KTLYVSVDPYMRGRMQDTKSY-VEPFALDKALSGGVIAEVVSDGN-HLKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYN 251          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.340e-44
Identity = 104/215 (48.37%), Postives = 131/215 (60.93%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIH---HTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+LS DPYMR                G  + G  VA+VV+S +  F KG +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P+G D YF++VGG+  +AV+L M+  GRIA CG ISQYN
Sbjct:   42 LFLSVDPYMRVAAK--------KLKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.301e-43
Identity = 100/215 (46.51%), Postives = 134/215 (62.33%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+LS DPYMR      ++        G+ + G  VA+VV+S +  F  G +V   +GW  +  I + +GL K+       +PLS   G +GMPG+TA+ G  E+C  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK  N L+ ALK+  P+G D YF++VGG+ L+ VL  M+  G+IA CG IS YN
Sbjct:   42 LFLSVDPYMRIASKRLKE--------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 101/215 (46.98%), Postives = 129/215 (60.00%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHT---DVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+LS DPYMR                G  + G  VA+VV+S +  F  G +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P+G D YF++VGG+  + V+L M+  GRIA CG ISQYN
Sbjct:   42 LFLSVDPYMRVAAK--------KLKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 96/214 (44.86%), Postives = 129/214 (60.28%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQ--GLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+LS DPYMR      ++        G  + G  VA+VV+S +P +  G LV   +GW  +S+    Q   L       +PLS   G +GMPG+TA+ G  EIC  K G+ + V+AA+GAVG +VGQ AK+ GC VVG+AGS EKV+ LK K GFD AFNYK    L+  LK+  P+G D YF++VGG+  + V+  M+  GR+A CG IS YN
Sbjct:   42 LFLSVDPYMRLGSKRLKE--------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVIRQMKKFGRVAICGAISMYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.766e-42
Identity = 101/215 (46.98%), Postives = 127/215 (59.07%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            LYL+ DPYMR            S   G  + G  VA+VV+S +  F  G +V   +GW  +S I N + L K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK   PEG D YF++VGG+  +  +  M+  GRIA CG IS YN
Sbjct:   42 LYLTVDPYMRIMAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.225e-42
Identity = 98/214 (45.79%), Postives = 127/214 (59.35%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+L+ DPYMR                G  + G  VA+V++S +  F  G +V    GW  +S+   KN + L       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+  PEG D YF++VGG+  +AV   M+  GRIA CG IS YN
Sbjct:   42 LFLTVDPYMRIAAR--------KLKEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGAISTYN 246          
The following BLAST results are available for this feature:
BLAST of CX291850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
P2_ARATH3.716e-9575.91Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH4.108e-9473.97Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO1.096e-4649.77Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YFMJ_BACSU1.340e-4445.33Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_MOUSE1.340e-4448.37Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_CAVPO3.301e-4346.51Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_RAT5.630e-4346.98Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_RABIT2.794e-4244.86Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_BOVIN4.766e-4246.98Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG6.225e-4245.79Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04006A06SK FlavFr1 Citrus clementina cDNA clone C04006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291850 ID=CX291850; Name=CX291850; organism=Citrus clementina; type=EST; length=654bp
CGGCACGAGGCAAGAATCTTTACTTGTCTTGCGATCCTTACATGAGAGCT
CGCATGTCCTTTAATCAAGATCCTGATTTCTCTTCTTTCACTCCTGGCTC
TCCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGATTCAGGGCACCCAG
AATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGGGTGGGAAGAGTAT
AGTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTCATCACACTGATGT
TCCCCTTTCTTATTATACTGGAATTCTTGGTATGCCTGGGATGACAGCTT
GGGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGGCGAATACATCTAT
GTTTCTGCAGCATCTGGTGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAA
GTTGATGGGTTGCTATGTTGTTGGAAGTGCTGGCAGTAGAGAAAAGGTTG
AACTACTAAAGAACAAGTTTGGATTTGATGATGCTTTCAATTATAAAGAG
GAGAACGACTTGGATGCTGCTTTGAAAAGGTGCTTTCCTGAAGGCATTGA
CATTTACTTTGAGCACGTAGGGGGAAAAATGCTGGATGCAGTGTTACTAA
ACATGAGACTTCACGGACGCATTGCAGCGTGTGGAATGATCTCACAGTAC
AATC
back to top