CX291860

Overview
NameCX291860
Unique NameCX291860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10503 contig Ccv1_Contig10503:780..1282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.643e-29
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 2
Query:    5 PVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 286
            P+N A + S GLVVD   P+TS+Q+RLADGTRL++ FN HHT+ D+  FIDASRPG ++ YQL  MGFPPK L +  QTIEQAG+AN+VVIQKF
Sbjct:  328 PMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_PONAB (NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  281 AKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_HUMAN (NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.752e-16
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  +++DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD +QT+++A L N+V++Q+
Sbjct:  281 AKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQR 368          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_BOVIN (NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  + +DE+ P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  281 AKASSSISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_RAT (NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  281 AKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_MOUSE (NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V++Q+
Sbjct:  281 AKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQR 368          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   20 SSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            + +S  + +DE+ P T++QIRLADG RL+  FN +H I DI  FI  +RP  A    + M  FP K L D  QT+++A L N+V++Q+
Sbjct:  280 AKASSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRIRDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQR 367          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: UBX2B_MOUSE (UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    8 VNTASSSSE--------GLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            V+T SS  E         +++D+++P+T +QIRLADG+RL+  FN  H I D+  FI  SRP  A    + +  FP K L D T T+++A + N+V++Q+
Sbjct:  230 VSTPSSPEEEDKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDFILVTSFPSKELTDETVTLQEADILNTVILQQ 329          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: UBX2B_XENLA (UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   44 VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            +DE++P+T +QIRLADGTRLI  FNL H I D+  FI  +R   A+     +  FP   L D TQT+E+A + N+V++Q+
Sbjct:  269 LDEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELTDETQTLEEADILNTVILQR 348          
BLAST of CX291860 vs. ExPASy Swiss-Prot
Match: UBX2B_RAT (UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    8 VNTASSSSE--------GLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQK 283
            V+T SS  E         +++D+++P+T +QIRLADG+RLI  FN  H I D+  FI  SRP  A    + +  FP K L D + T++ A + N+V++Q+
Sbjct:  230 VSTPSSPEEEDKSILNAAVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDFILVTSFPSKELTDESVTLQDADILNTVILQQ 329          
The following BLAST results are available for this feature:
BLAST of CX291860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBAX1_ARATH2.643e-2963.83UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_PONAB9.752e-1645.45NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 ... [more]
NSF1C_HUMAN9.752e-1645.45NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 ... [more]
NSF1C_BOVIN2.837e-1545.45NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV... [more]
NSF1C_RAT1.408e-1444.32NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c ... [more]
NSF1C_MOUSE1.408e-1444.32NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 ... [more]
NSF1C_CHICK3.137e-1443.18NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]
UBX2B_MOUSE9.127e-1439.00UBX domain-containing protein 2B OS=Mus musculus G... [more]
UBX2B_XENLA2.656e-1346.25UBX domain-containing protein 2B OS=Xenopus laevis... [more]
UBX2B_RAT4.530e-1339.00UBX domain-containing protein 2B OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionC04006B12SK FlavFr1 Citrus clementina cDNA clone C04006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291860 ID=CX291860; Name=CX291860; organism=Citrus clementina; type=EST; length=503bp
CACCCCGGTCAACACTGCTTCCTCCTCTTCTGAGGGTCTGGTTGTTGATG
AAAACCTTCCGTCGACATCAGTTCAGATCAGGTTGGCGGACGGAACCCGC
TTGATAGCACACTTCAATCTTCACCACACAATCAGCGACATTCATTCCTT
CATTGATGCATCTAGGCCTGGGACTGCTAGGAACTATCAGCTGCAGATGA
TGGGATTTCCTCCAAAAGTTCTCGCTGATCGAACTCAGACCATAGAGCAG
GCGGGCCTTGCCAATTCGGTGGTTATCCAGAAATTCTGAGCAAGCACTCT
GCTCTTCAAACGCTCTCAGTTGCCTATTATTAACTGAAAATATTTTATTG
CACTTTAAAAAAAGAAAAAGAGTCTCTCCATTTACTTGTATGTAGAGAGA
GATTAGGTTTTTGTAGACGACACCTTGGTAATGGATGGGTTGATTCGAGT
GATTAACAGTCTCTATGTTTTTGTTTTTAGTACCATGATCTGTCTTCAAA
ATG
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