CX291865

Overview
NameCX291865
Unique NameCX291865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12011 contig Ccv1_Contig12011:189..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291865 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.720e-22
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  146 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAAS 445
            ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++            +Q            MVN+AAAS
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAAS 122
[Close]
BLAST of CX291865 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.043e-11
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:  149 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLM 346
            KL NR  T+H+ +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLLLL+ ++
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSIL 72
The following BLAST results are available for this feature:
BLAST of CX291865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RTNLP_ARATH1.720e-2253.00Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH3.043e-1140.91Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC04006C05SK FlavFr1 Citrus clementina cDNA clone C04006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291865 ID=CX291865; Name=CX291865; organism=Citrus clementina; type=EST; length=447bp
TGCATGTCGTTTACATTGGCCGCTAAATTTCCGGCGTTGATTGATGGATA
ATTCGGCAGATTCGTGCGATATAGTCGATCGAGATGGAGACGCAGCTGCC
ACCAGTTCCTCAACGACATCCGCCCCCGCCGCCGGCGCCGGAGGATTTAA
GCTTTTAAATCGGCACGGAACAGTTCACCAGTTCATGGGCGGCGGTAGAA
CTGCTGATGTGCTGTTATGGAAACGACGCCGTGTTTCTTTTGGTGTGATT
GTGGTTGCTACCGTTGCATGGCTGATATTTGAGCGGTCTGGGTTACCTTT
CTTGTCTGTTTGTTCGGATGTTTTGCTGTTGCTGATCGTTTTGATGTTCT
TTCGTGCCAATTTTGCTGCTTTTAGAAATAAACAACTAGAGTCATTACCT
GAGTTGGAGGTATCGGAGGAAATGGTTAATAATGCTGCAGCATCATT
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