CX291874

Overview
NameCX291874
Unique NameCX291874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:91..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 5.097e-76
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHA
Sbjct:   12 IKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 5.635e-75
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+A
Sbjct:   12 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 6.231e-74
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HA
Sbjct:   12 IKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 6.889e-73
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA
Sbjct:   12 IKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 6.889e-73
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA
Sbjct:   12 IKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.697e-71
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHA
Sbjct:   12 IKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 3.780e-71
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHA
Sbjct:   12 IKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.100e-70
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKP PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA
Sbjct:   12 IKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.200e-70
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HA
Sbjct:   12 IKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHA 148
[Close]
BLAST of CX291874 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.200e-70
Identity = 126/137 (91.97%), Postives = 130/137 (94.89%), Query Frame = 2 
Query:    2 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHA 412
            IKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA
Sbjct:   12 IKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHA 148
The following BLAST results are available for this feature:
BLAST of CX291874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_VITRI5.097e-7697.0860S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES5.635e-7596.3560S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_SOLME6.231e-7495.6260S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL101_ORYSJ6.889e-7394.1660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI6.889e-7394.1660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ARATH1.697e-7191.9760S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ARATH3.780e-7191.2460S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL10_MAIZE1.100e-7091.2460S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL103_ARATH3.200e-7091.2460S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL102_ORYSJ3.200e-7091.9760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC04006D07SK FlavFr1 Citrus clementina cDNA clone C04006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291874 ID=CX291874; Name=CX291874; organism=Citrus clementina; type=EST; length=412bp
AATCAAGAACAAACCCTACCCAAAGTCCCGCTTTTGCCGCGGTGTCCCCG
ATCCCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGTCGAC
GAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGTGTC
GAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCA
AGTACGCCGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTC
CATGTTCTGCGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCT
CCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTC
GTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAAC
AGCCACCATGCT
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