CX291887

Overview
NameCX291887
Unique NameCX291887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11358 contig Ccv1_Contig11358:1250..1767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.532e-51
Identity = 106/179 (59.22%), Postives = 114/179 (63.69%), Query Frame = 1
Query:   10 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNP---------XXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALYNQS 516
            +DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNH                            DG+MNP NLLARA+LPCS+SMATISASAPFPTVTLDLTHSP P                         Q Q + ++    LP V GQALYNQS
Sbjct:  312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQS 490          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.927e-50
Identity = 104/168 (61.90%), Postives = 112/168 (66.67%), Query Frame = 1
Query:   10 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALYN 510
            +DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNH                            DG+MNP NLLARAILPCSSSMATISASAPFPT+TLDLT+SPN                 +P    +V    LPQV GQA+YN
Sbjct:  297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV----LPQVVGQAMYN 460          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.171e-49
Identity = 103/168 (61.31%), Postives = 109/168 (64.88%), Query Frame = 1
Query:   10 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALY 507
            +DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH                             DG+MNP NLLAR ILPCSSSMATISASAPFPT+TLDLT SPN                 Q   L  +  + LP + GQALY
Sbjct:  292 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQF----SQRSGLVELNQSVLPHMMGQALY 455          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.539e-35
Identity = 75/133 (56.39%), Postives = 86/133 (64.66%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH--XXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNPNLLARAI----LPCSSSMATISASAPFPTVTLDLTHSPNP 393
            DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED TIL TTYEGNHNH                                + +P+  + +      P +S++AT+SASAPFPT+TLDLT+ P P
Sbjct:  240 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRP 372          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.909e-26
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED +ILITTYEG HNH
Sbjct:  236 DGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNH 292          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.799e-26
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRKQVQRCA+D +ILITTYEG H+H
Sbjct:  228 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSH 284          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.463e-26
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+ED +ILI+TYEG HNH
Sbjct:  192 DGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNH 248          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT-ILITTYEGNHNH 183
            DGCQWRKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC E+ T   +TTYEGNH+H
Sbjct:  204 DGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDH 261          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG QWRKYGQK+ + NP PRAY+RC+ A  CPV+K+VQR AED ++L+ TYEG HNH
Sbjct:  177 DGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
BLAST of CX291887 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.468e-17
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   13 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            DG +WRKYGQK+ KGNP PR+YY+CT  +GCPVRK V+R + D   +ITTYEG HNH
Sbjct:  363 DGYRWRKYGQKVVKGNPNPRSYYKCT-TIGCPVRKHVERASHDMRAVITTYEGKHNH 418          

HSP 2 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 RGTDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 183
            +G DG  WRKYGQK  KG+  PR+YY+CT    CP +K+V+R  E + I    Y+G+HNH
Sbjct:  182 KGEDGYNWRKYGQKQVKGSENPRSYYKCTFP-NCPTKKKVERSLEGQ-ITEIVYKGSHNH 239          
The following BLAST results are available for this feature:
BLAST of CX291887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
WRKY6_ARATH1.532e-5159.22WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK31_ARATH4.927e-5061.90Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH4.171e-4961.31Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK47_ARATH1.539e-3556.39Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRKY9_ARATH2.909e-2687.72Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK72_ARATH3.799e-2685.96Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK61_ARATH8.463e-2684.21Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK36_ARATH1.071e-2074.14Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRK18_ARATH2.916e-1864.91WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK33_ARATH2.468e-1764.91Probable WRKY transcription factor 33 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC04006F03SK FlavFr1 Citrus clementina cDNA clone C04006F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291887 ID=CX291887; Name=CX291887; organism=Citrus clementina; type=EST; length=518bp
GCACGAGGCACTGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGC
TAAAGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACAATGGCAGTTG
GTTGCCCAGTTCGTAAGCAAGTTCAACGTTGTGCGGAAGATAGGACGATT
TTGATAACAACTTATGAAGGCAATCACAATCATCCCTTACCTCCTGCTGC
AATGGCAATGGCATCAACAACAACAGCTGCTGCTAGCATGTTACTTTCAG
GATCAATGTCGAGTGCAGATGGGATAATGAACCCCAATTTGCTAGCCAGA
GCTATTCTTCCTTGCTCATCAAGCATGGCTACGATTTCAGCTTCTGCCCC
ATTTCCTACAGTTACATTAGACCTTACTCATTCACCAAACCCTTTACAAC
TCCAAAGGCAAGCAGCTCAATTCCAAGTCCAATTTCCAGGCCAGCCACAA
AATCTTGCCTCTGTCACAAACACTCAATTGCCTCAAGTTTTTGGTCAGGC
CCTTTACAATCAATCAAA
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