CX291895

Overview
NameCX291895
Unique NameCX291895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.590e-56
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 1
Query:   10 KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            K+QILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEG KA+Q LK+VYAHWVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVS+A+G D+RIGP+FLNSSVG
Sbjct:  149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVG 267          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.767e-55
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 1
Query:   10 KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            K+QILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEGQKAIQ LKDVYA WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA+V QVS+++G D+RIGP+FLN+SVG
Sbjct:  149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVG 267          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.699e-53
Identity = 102/119 (85.71%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   10 KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            K+QILSNPEFLAEGTAI DLFNPDRVLIGGRETPEG KA+Q LK+VYA+WVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCE+TGADVTQVS+A+G D+RIG +FLN+SVG
Sbjct:  149 KFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVG 267          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.120e-46
Identity = 89/117 (76.07%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.120e-46
Identity = 89/117 (76.07%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQKA++AL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.120e-46
Identity = 89/117 (76.07%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.215e-45
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+A+QAL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCE+TGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.072e-45
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKL ANAFLAQRISS+N++SALCEATGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.706e-45
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   16 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++PEGQKA++AL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATGADV +V+ AIG D RIG +FL +SVG
Sbjct:  155 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTDQRIGNKFLKASVG 271          
BLAST of CX291895 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 82/118 (69.49%), Postives = 101/118 (85.59%), Query Frame = 1
Query:   13 YQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVG 366
            Y ILSNPEFLAEGTAI DL N DRVLIGG ETPEG +A++ L  +Y HW+P+  I+TTN WS+ELSKLAANAFLAQRISS+N++SA+CEATGADV++V+ A+G D+RIG +FL +SVG
Sbjct:  150 YDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVG 267          
The following BLAST results are available for this feature:
BLAST of CX291895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UGDH1_ARATH7.590e-5689.08Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_SOYBN3.767e-5587.39UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH2.699e-5385.71Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_PONAB7.120e-4676.07UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_MOUSE7.120e-4676.07UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_HUMAN7.120e-4676.07UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT1.215e-4575.21UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_BOVIN2.072e-4575.21UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_CHICK2.706e-4574.36UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_DROME5.103e-4469.49UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionC04006F12SK FlavFr1 Citrus clementina cDNA clone C04006F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291895 ID=CX291895; Name=CX291895; organism=Citrus clementina; type=EST; length=367bp
GCACGAGGCAAATATCAGATTCTATCAAACCCGGAGTTTCTTGCTGAGGG
TACTGCAATTCAGGACCTTTTCAATCCTGACAGGGTTCTTATTGGAGGCA
GGGAAACCCCCGAAGGCCAAAAGGCGATTCAAGCACTGAAAGATGTTTAT
GCACATTGGGTTCCCGAGGACAGGATCATCACAACCAACCTTTGGTCAGC
CGAGCTCTCCAAGCTGGCTGCTAATGCCTTCTTGGCTCAGAGGATTTCTT
CTGTCAACGCCATGTCTGCTCTTTGTGAGGCTACCGGTGCAGATGTCACT
CAGGTTTCTCATGCAATCGGCAAGGACACAAGAATTGGCCCCAGGTTTCT
GAATTCCAGTGTTGGTT
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