CX291905

Overview
NameCX291905
Unique NameCX291905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            V GS IGG+KETQEMIDFAA+HNI ADIEVIP +Y+NTAMERL KADVRYRF
Sbjct:  296 VAGSGIGGMKETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRF 347          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.998e-18
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 2
Query:  260 LFSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            +FSL+    + +GG++ GG+KETQEM+DFAAKHNI AD+EVIP +YVNTAMERL K+DVRYRF
Sbjct:  288 VFSLL-KGRKLLGGTINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRF 349          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            + GS IGGLKETQEM+DFAA+HNI AD+EVIP +YVNTAMERL K+DVRYRF
Sbjct:  275 LAGSNIGGLKETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRF 326          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.799e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            + GS IGG+KETQEMIDFAAKH+I++DIEV+P +YVNTAMERL K DVRYRF
Sbjct:  299 LAGSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRF 350          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.962e-17
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            VGG+L+GGLKETQEMIDF+ KHN++ +IEV+P +YVN AM+RLAKADV+YRF
Sbjct:  300 VGGTLVGGLKETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRF 351          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            V GS+IGG+KETQEMID A KHNI ADIE+I A+YVNTAMERL KADVRYRF
Sbjct:  294 VMGSMIGGIKETQEMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRF 345          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            V GS++GG+KETQEM+D A KHNI ADIE+I A+YVNTAMERLAKADV+YRF
Sbjct:  294 VVGSMVGGIKETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRF 345          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.886e-16
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  287 RGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            R + GS IGGLKETQEMIDFAAK+NI AD+EVIP +Y+NTAM+RL K+DV+YRF
Sbjct:  296 RTIAGSGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRF 349          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  293 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            VGGS +GG+KETQEM+DF AKHNI ADIE+I  + +NTAMERLAK+DVRYRF
Sbjct:  298 VGGSDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRF 349          
BLAST of CX291905 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.596e-15
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  263 FSLVPNSARGVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPANYVNTAMERLAKADVRYRF 448
            FSL+    + + GS IGG++ETQEMIDFAA+H I+A+IE+I  +YVNTAM+RLAK DVRYRF
Sbjct:  290 FSLILGR-KSIAGSGIGGMQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRF 350          
The following BLAST results are available for this feature:
BLAST of CX291905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MTDH_FRAAN9.998e-1882.69Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_APIGR9.998e-1868.25Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH_PETCR2.227e-1778.85Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
MTDH_MESCR3.799e-1776.92Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH3_STYHU4.962e-1773.08Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH8_ARATH8.464e-1780.77Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH7_ARATH8.464e-1776.92Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
GEDH1_OCIBA1.886e-1674.07Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH9_ARATH5.486e-1675.00Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH6_ARATH1.596e-1564.52Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC04006G10SK FlavFr1 Citrus clementina cDNA clone C04006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291905 ID=CX291905; Name=CX291905; organism=Citrus clementina; type=EST; length=448bp
GGGTTTTTTTTTTTTTTTTTTAACAGAGTGAAAATGGTAGAATAGCATGT
TTTCGGAAAACTAAGGGCATACATCATCTCACAAGTTTTGCCAACATAGA
ATTCATCACGATATGTTCCAGTTCGATTATAAAATATACAAACTTTATTC
AAGTAGTAGTACCATCTGCACACTCAACCCAACAACAAAAGGAGCTTATC
AGTTACAGCGTCCACACACTACATCACACTACATCCGCGGGAGTCAGTCC
CTTGTACTGCTTTTTAGCCTCGTGCCGAATTCGGCACGAGGAGTTGGTGG
CAGTCTCATTGGGGGGTTGAAGGAGACTCAAGAGATGATTGATTTTGCAG
CAAAACACAACATCAGAGCTGATATTGAGGTCATACCGGCCAACTATGTG
AACACAGCCATGGAGCGCCTTGCTAAAGCCGATGTTAGATATCGCTTT
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