CX291913

Overview
NameCX291913
Unique NameCX291913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291913_ssr3 microsatellite CX291913_ssr3:3..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 484
            F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 484
            F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 484
            F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    + +ECPVCK  ++ + + P+YGRG+
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGS 84          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD S+D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   39 FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 99          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 487
            F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++
Sbjct:   39 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 99          
BLAST of CX291913 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  305 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNST 490
            F+CNICLD ++D VV+ CGHLFCWPCL +WL    + + CPVCK  +    + PIYGRG  +
Sbjct:   24 FECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDS 85          
The following BLAST results are available for this feature:
BLAST of CX291913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_RAT2.602e-1853.33E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE2.602e-1853.33E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN7.572e-1851.67E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
RN185_DANRE7.572e-1852.46RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_RAT1.687e-1750.82RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_PONAB1.687e-1750.82RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_MOUSE1.687e-1750.82RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_HUMAN1.687e-1750.82RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK1.687e-1750.82RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_CAEEL3.758e-1753.23RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
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Properties
Property NameValue
Genbank descriptionC04006H10SK FlavFr1 Citrus clementina cDNA clone C04006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291913 ID=CX291913; Name=CX291913; organism=Citrus clementina; type=EST; length=494bp
GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGACCTCGTGCCGAATTCGGCACGAGGGAAAGT
AGGAACCTTCCAATGGAATTGGATCAATTGCTCAGCCATTCCGCTAATGG
AAGTACATTACAGACAGGTGAGGGTAGTGTTGCTGCTGAGGAAAGAGCCA
ATGAGGTACCCAAAACATGTGAAAACAACACTGGATTTTTGGAAGATGAA
GTATCAGAGAAGAAAGATGATGATGAGAAAGGTAGTGGAAATGATGGGAG
TTTCTTCGATTGCAATATCTGTTTAGATTTGTCTAGGGACCCTGTTGTGA
CTTGCTGTGGTCACTTGTTCTGTTGGCCTTGCCTTTACAGATGGTTACAC
GTGCATTCAGATGCAAAGGAATGTCCAGTGTGCAAGGGTGAGGTCACGGT
TAAAAATATCACACCTATATATGGTCGTGGGAATAGCACACGTG
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