CX291915

Overview
NameCX291915
Unique NameCX291915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7906 contig Ccv1_Contig7906:306..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 6.293e-70
Identity = 125/152 (82.24%), Postives = 135/152 (88.82%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQV YERKKQLNKLR KAEKVAEE+LGSQLD+LAPVKY
Sbjct:   55 QKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 8.219e-70
Identity = 126/152 (82.89%), Postives = 134/152 (88.16%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+ V YERKKQLNKLR KAEKVAEEKLG+QLDILAPVKY
Sbjct:   55 QKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.402e-69
Identity = 124/152 (81.58%), Postives = 135/152 (88.82%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKER+Q  YERKKQL+KLRAKAEKVAEEKLGSQLD+LAPVKY
Sbjct:   55 QKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.550e-68
Identity = 125/152 (82.24%), Postives = 133/152 (87.50%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHKYCLLGRL+SEVGWN+YDTI+ELE KRKERSQ  YERKKQL KLRAKAEKVAEEKLGSQLD+LA +KY
Sbjct:   55 QKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 8.505e-67
Identity = 122/152 (80.26%), Postives = 134/152 (88.16%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+L+SEVGWNYYDTI+ELEKKRKERSQV YERKKQLNKLR KAE+VA+EKLGSQLDILAPVKY
Sbjct:   55 QKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.231e-57
Identity = 102/152 (67.11%), Postives = 128/152 (84.21%), Query Frame = 3
Query:    9 RKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 464
            +KMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRL+ EVGW+++DTI ELE+KRK ++QV+YER+KQL KLR+KA ++AE++L  ++++LA +KY
Sbjct:   55 QKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 2.944e-43
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+G   ++L
Sbjct:   51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 8.565e-43
Identity = 80/146 (54.79%), Postives = 104/146 (71.23%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:   51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.119e-42
Identity = 80/146 (54.79%), Postives = 104/146 (71.23%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:   51 KLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of CX291915 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.461e-42
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 3
Query:   12 KMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 449
            K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+     +L
Sbjct:   51 KLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196          
The following BLAST results are available for this feature:
BLAST of CX291915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R13A3_ARATH6.293e-7082.2460S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A4_ARATH8.219e-7082.8960S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.402e-6981.5860S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH1.550e-6882.2460S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU8.505e-6780.2660S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA1.231e-5767.1160S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_BOVIN2.944e-4355.4860S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_HUMAN8.565e-4354.7960S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_PONAB1.119e-4254.7960S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_MACFA1.461e-4254.7960S ribosomal protein L13a OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC04006H12SK FlavFr1 Citrus clementina cDNA clone C04006H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291915 ID=CX291915; Name=CX291915; organism=Citrus clementina; type=EST; length=490bp
TCGGCACGAGGAAAATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAAC
ACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTT
CTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAAGCGTGGAGCTG
CAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTGCACCTTATGAC
AAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCA
GAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATCTGAGGTTGGAT
GGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGAGAAAGGAGAGG
TCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAACTTAGGGCTAA
GGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATTGGACATCCTTG
CTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAAT
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