CX291926

Overview
NameCX291926
Unique NameCX291926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291926_ssr69 microsatellite CX291926_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291926 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = -2
Query:  243 SDYAVLDSVRQHLLGEXXXXXXXXXXXXXXSN-----GAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDR 521
            SDYA L+S+R+HLLGE               +        P Y R+ SFS+LYPC T++WGDLPL+ENDSEDMLV+  L DA   GW P    ++ DR
Sbjct:    9 SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDR 106          
BLAST of CX291926 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.547e-15
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = -2
Query:  252 PTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAE 416
            P Y RSSSFS L PCLT++WGDLPL+ NDSEDM+++ FL+DA ++GW P    +E
Sbjct:   18 PVYCRSSSFSSLMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSE 72          
BLAST of CX291926 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -2
Query:  270 GAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP 425
            G  P Y R+SSFSRL PCLT+ WGDLPL+ +DSEDM+++  L+DAL VGW P
Sbjct:   16 GEFPVYRRNSSFSRLIPCLTETWGDLPLKVDDSEDMVIYTLLKDALNVGWSP 67          
BLAST of CX291926 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = -2
Query:  270 PTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP 416
            P Y R+SSFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P
Sbjct:   10 PVYHRTSSFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTP 58          
BLAST of CX291926 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query:  270 PPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP 419
            PPT     SFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P
Sbjct:   10 PPT-----SFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTAGWTP 54          
The following BLAST results are available for this feature:
BLAST of CX291926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EF100_ARATH5.191e-1946.94Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC4.547e-1560.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF1_TOBAC5.028e-1463.46Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY6.566e-1465.31Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_TOBAC1.369e-1162.00Ethylene-responsive transcription factor 2 OS=Nico... [more]
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Properties
Property NameValue
Genbank descriptionC04007A12SK FlavFr1 Citrus clementina cDNA clone C04007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291926 ID=CX291926; Name=CX291926; organism=Citrus clementina; type=EST; length=552bp
ACAAACTCTGTATTTCACTGTTGCCTGCTTAACTTGGCTGCCCGCTTTCT
GAAGGTGACAATTATGTCTGTATGTATGTATATTTTGAAAGACGACAAGC
GATATAATGATATTCATAAATCGGCCAAAAAAAAAAAAAAAAAAAAAACC
TCGTGCCGAATTCGGCACGAGGCCACTGTAGGAGCCGGAGCACCTCGCTC
CTCCGGTAACGCCGGTGCCGGCGCCACTTCCGCCACCTGATGGCGATCAG
ATTCGGCTAACTGCTCCTGTGGAACCCATCCAACTGTTAGGGCATCACGC
AAGAAATTAAAGACAAGCATGTCCTCGGAGTCGTTCTCCCTCAAAGGGAG
GTCCCCCCAGTTGTCCGTTAGACATGGGTACAATCGGCTAAAGCTTGAGC
TCCTGAAATAAGTAGGGGGAGCCCCGTTGGACTTGGAACTCGCTGATGAC
ACGCTGCTCAGTCCAGTCTCCGATTCGCCGAGTAAGTGCTGGCGAACTGA
ATCCAGCACAGCATAATCCGACGGCATCATATTCATACTACCACCACTAC
TA
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