CX291958

Overview
NameCX291958
Unique NameCX291958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length273
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 6.961e-41
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKKIED+I+QAIQWL+
Sbjct:  500 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLE 588          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.455e-40
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TTGQKNKITITNDKGRLSK+EIEKMVQEAEKYKAEDEE KKKVEAKN+LENYAYNMRNTVKDEKIGSKL   DKKKIEDA+DQAI WL+S
Sbjct:  502 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLES 591          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.696e-40
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            TTGQKNKITITNDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT+KDEKI SKL   D+ KIEDAI+QAIQWLD
Sbjct:  500 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLD 588          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.005e-39
Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            TTG+KNKITITNDKGRLSK++IEKMVQEAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKK+ED+I++AIQWLD
Sbjct:  500 TTGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLD 588          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 2.925e-39
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            TTGQKNKI ITNDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVE+KNALENYAYNMRN VKDEKIG+KL  ADKKKIE+AID +IQWLD
Sbjct:  500 TTGQKNKIRITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLD 588          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.509e-39
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKV+AKNALENYAYNMRNT++DEKIG KL   DKKKIED+I+ AI+WL++
Sbjct:  500 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEA 589          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.111e-38
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TTGQKNKITITNDKGRLSK+EIEKMVQEAEKYKAEDEE KKKV+AKNALENYAYNMRNT+KD+KI SKL   DKKKIEDA+D AI WLDS
Sbjct:  496 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDS 585          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.451e-38
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDS 271
            TTGQKNKITITNDKGRLSK+EIE+MVQEAEKYK+EDEE KKKVEAKNALENYAYNMRNT+KD+KI S+L  ADKK+IEDAID+AI+WLD+
Sbjct:  500 TTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDN 589          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.562e-35
Identity = 70/89 (78.65%), Postives = 81/89 (91.01%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            T G KNKITITNDKGRLSK+EIEKMV++AE+YKAEDEE KKKVEAKN+LENYAYNMRNT+KDEKIG KL P +K+KIE A++ AIQWL+
Sbjct:  499 TAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLE 587          
BLAST of CX291958 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.455e-35
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 268
            T G KNKITITND GRLSKDEIEK+V+EAEKYKAEDEE KKKVEAKNALENYAYNMRNT+KD+KI  KLD  DK+KIE A+++AI+WL+
Sbjct:  502 TAGVKNKITITNDNGRLSKDEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLE 590          
The following BLAST results are available for this feature:
BLAST of CX291958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
HSP71_ARATH6.961e-4189.89Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP71_SOLLC3.455e-4090.00Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_SOLLC7.696e-4088.76Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP72_ARATH1.005e-3985.39Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP7E_SPIOL2.925e-3987.64Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP73_ARATH8.509e-3984.44Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE1.111e-3886.67Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP7C_PETHY1.451e-3884.44Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP70_SOYBN2.562e-3578.65Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA7.455e-3578.65Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionC04007D12SK FlavFr1 Citrus clementina cDNA clone C04007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291958 ID=CX291958; Name=CX291958; organism=Citrus clementina; type=EST; length=273bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAA
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