CX292046

Overview
NameCX292046
Unique NameCX292046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10310 contig Ccv1_Contig10310:615..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.313e-60
Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1
Query:    7 LGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            LGL +CL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKGKSLTG+L A+DV+GD  LVGIFYFIGFG FCLE+L+S
Sbjct:  131 LGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVGIFYFIGFGFFCLETLIS 255          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.269e-58
Identity = 98/127 (77.17%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            TYLGL +CL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG Y LWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++FKGKSL G+LPA+DV+   A+VGIFYFIGF  FCLES+VS
Sbjct:  130 TYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVS 256          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.693e-58
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 1
Query:    7 LGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            LGL VCLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAY +WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKSLTG+LPA+DV+  + LVGIFYFIGFG FCLESLVS
Sbjct:  125 LGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVS 249          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 1.833e-57
Identity = 99/127 (77.95%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            TYLGL + L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG Y LWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+FKGKSL G+LPA+DV+   ALVGIFYFIGFGLFCLES+VS
Sbjct:  132 TYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVS 258          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.515e-56
Identity = 96/127 (75.59%), Postives = 112/127 (88.19%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            ++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAY LWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKGKSL G+LPA+DV+G  A+VGIFYF+GFGLFCLESL+S
Sbjct:  123 SFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLS 249          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.992e-55
Identity = 96/125 (76.80%), Postives = 110/125 (88.00%), Query Frame = 1
Query:    7 LGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAY LWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKGKSL G+LPA+DV+G++A+VGIFYFIGFGLFCLESL+S
Sbjct:  129 LGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLS 253          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.414e-54
Identity = 90/127 (70.87%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAY LWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+S
Sbjct:  147 SFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLS 273          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.414e-54
Identity = 90/127 (70.87%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAY LWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+GKSL G+LPA+D++  +ALVGIFYF+GFGLFC+ESL+S
Sbjct:  147 SFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLS 273          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.359e-52
Identity = 87/125 (69.60%), Postives = 107/125 (85.60%), Query Frame = 1
Query:    7 LGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            LGL +CL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P I+F GKSLTG+ PA+ ++G+  +VG+FYF+GF +FCLESL+S
Sbjct:  156 LGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLS 280          
BLAST of CX292046 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.837e-49
Identity = 89/127 (70.08%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 TYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDDALVGIFYFIGFGLFCLESLVS 381
            T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAY LWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKSLTG LPA++++  +A VGI YFIG G FC+E+L++
Sbjct:  124 TLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLN 250          
The following BLAST results are available for this feature:
BLAST of CX292046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM_PEA2.313e-6082.40Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH1.269e-5877.17Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH3.693e-5881.60Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ARATH1.833e-5777.95Secretory carrier-associated membrane protein 5 OS... [more]
SCAM3_ORYSJ4.515e-5675.59Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ORYSJ4.992e-5576.80Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ORYSJ9.414e-5470.87Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI9.414e-5470.87Putative secretory carrier-associated membrane pro... [more]
SCAM4_ORYSJ1.359e-5269.60Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_ARATH1.837e-4970.08Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC04008H03SK FlavFr1 Citrus clementina cDNA clone C04008H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292046 ID=CX292046; Name=CX292046; organism=Citrus clementina; type=EST; length=381bp
ACATATTTAGGATTGTTTGTGTGTCTCCTGTGGAACATCGTAGCTGTTAC
CACAGCATGGATCAAAGGCGAAGGTGTAAAAATCTGGTTTCTCGCCATTA
TTTACTTCATAGCAGGAGTTCCAGGTGCTTATGGGCTGTGGTATCGTCCA
CTCTATCGTGCTTTCAGGACTGAAAGTGCAATGAAGTTTGGATGGTTTTT
CTTGTTTTACTTGCTCCACATTGGCTTTTGCATATTTGCCTCAGTTGCTC
CTCCAATAATTTTCAAAGGAAAGTCACTCACTGGCGTTTTGCCTGCGGTG
GATGTTATGGGTGACGATGCACTGGTTGGGATATTCTACTTCATTGGATT
TGGATTATTCTGCCTGGAATCATTGGTCAGC
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