CX292056

Overview
NameCX292056
Unique NameCX292056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig408 contig Ccv1_Contig408:831..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.911e-31
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  328 EYVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 549
            +YVQHKM EK+ DIW M+S+GAY+YVCGDAKGMARDVHRTLHTI QEQGS+DS++AE  VKNLQMTGRYLRDVW
Sbjct:  641 QYVQHKMAEKASDIWRMISDGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQAEGFVKNLQMTGRYLRDVW 714          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.586e-28
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  328 EYVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 549
            EYVQHKMM+K+  +W+++S+G YLYVCGDAKGMARDVHRTLH+IVQEQ ++DS+KAE++VK LQM GRYLRDVW
Sbjct:  617 EYVQHKMMDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENVDSTKAEAIVKKLQMDGRYLRDVW 690          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_VIBCH (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Vibrio cholerae GN=cysJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH+++E++  +W  L EGAY YVCGDA  MA+DVH+ L T+V++QG L+  +AE  V  L+   RY RDV+
Sbjct:  542 YVQHRLLEQAELVWQWLQEGAYFYVCGDASRMAKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY 614          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_VIBC3 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cysJ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH++++++  +W  L EGAY YVCGDA  MA+DVH+ L T+V++QG L+  +AE  V  L+   RY RDV+
Sbjct:  542 YVQHRLLDQAELVWQWLQEGAYFYVCGDASRMAKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY 614          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ERWCT (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Erwinia carotovora subsp. atroseptica GN=cysJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ EK  ++W  + +GA+LYVCGDA  MA+DV R L  ++ E G +DS +A+  + +L++  RY RDV+
Sbjct:  537 YVQDKLREKGAEVWRWIQDGAHLYVCGDANRMAKDVERALLDVIVEHGGMDSEQADEFLSDLRLERRYQRDVY 609          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: REDB_DICDI (NADPH oxidoreductase B OS=Dictyostelium discoideum GN=redB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ+K++E    +W +L++GAY YVCGD + M++ V + L +I++E GS D + A+  + ++   GRYL+DVW
Sbjct:  594 YVQNKLLEHKEKVWELLNKGAYFYVCGDGRNMSKAVQQALLSIIKEFGSKDDNSAQQFIDDMSSHGRYLQDVW 666          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_VIBF1 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=cysJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH+++E +  +W  L +GAY+YVCGDA  MA+DVH  L  +V++ G     +AE  V  L+   RY RDV+
Sbjct:  532 YVQHRILEHAAQVWQWLQDGAYIYVCGDATRMAKDVHEALICVVEQHGQKTREEAEQFVNELRKAKRYQRDVY 604          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_BACSU (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Bacillus subtilis GN=cysJ PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH+M+E S +++  L EGA +Y+CGD K MA DVH TL  I++++G++   +AE+ + ++Q   RY RDV+
Sbjct:  533 YVQHRMLEHSAELFEWLQEGAAVYICGDEKHMAHDVHNTLLEIIEKEGNMSREEAEAYLADMQQQKRYQRDVY 605          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_BOVIN (NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEG-AYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH + +    +W ++ EG A++YVCGDA+ MARDV  T + IV EQG+++ ++A   VK L   GRY  DVW
Sbjct:  604 YVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQAVDYVKKLMTKGRYSLDVW 677          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_HUMAN (NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH + +    +W ++  GA++YVCGDA+ MARDV  T + IV E G+++ ++A   +K L   GRY  DVW
Sbjct:  604 YVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 676          
The following BLAST results are available for this feature:
BLAST of CX292056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
NCPR_CATRO5.911e-3181.08NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU3.586e-2874.32NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
CYSJ_VIBCH4.113e-1650.68Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_VIBC39.162e-1649.32Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ERWCT3.849e-1445.21Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
REDB_DICDI5.028e-1442.47NADPH oxidoreductase B OS=Dictyostelium discoideum... [more]
CYSJ_VIBF18.576e-1445.21Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_BACSU8.576e-1445.21Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
NCPR_BOVIN1.120e-1347.30NADPH--cytochrome P450 reductase OS=Bos taurus GN=... [more]
NCPR_HUMAN1.910e-1343.84NADPH--cytochrome P450 reductase OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC04010A05SK FlavFr1 Citrus clementina cDNA clone C04010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292056 ID=CX292056; Name=CX292056; organism=Citrus clementina; type=EST; length=551bp
AGAGTCGATTGAACCATTTTTGGTTCTTATATGGAAAATCTGAGTTCACA
ATGCTACGCCTAGCGAGTAACGATAATTACCATATTCTGTATTTATAAAT
TACATGAACAAAAAATTCCTTCATATGGTAAGGGTAAAAAAGAAAAAAAA
AAAGAAAAAAAGAATCGCAGTTGCCTTTTCGGGGTGCGGGAGGCAGGACC
CACGCAAATAGCCTTTCCGTTGAGTGCTTTTCAAATGAGCTGACCCGAGA
TAACATATTTATGTATGTATTATGCAATCACCTTCGAATTTTACTAGTGA
GAAGACTCAGGATCAGAAGGATGGTCACCATACATCACGTAGATACCTGC
CAGTCATTTGCAAATTCTTCACCATGCTCTCAGCTTTAGAGCTGTCAAGA
GATCCCTGCTCTTGAACAATAGTGTGCAGAGTTCGGTGGACATCTCTAGC
CATGCCTTTGGCATCACCACAAACATACAAGTAAGCTCCCTCAGAAAGCA
TGTTCCAGATATCCCAAGACTTCTCCATCATTTTATGCTGCACATATTCC
T
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