CX292065

Overview
NameCX292065
Unique NameCX292065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11432 contig Ccv1_Contig11432:4..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.894e-24
Identity = 62/120 (51.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  151 HGKRPLPLEASPEEKEKEQDNN-FPAWTTHES-DMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            +GKRP   + S E+KE + D N FP ++     DM AMVSALTQVIG              V  +   NP              R+RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTFET
Sbjct:    7 YGKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQPVVYNQQDPNPPAPPTQDQGLL---RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFET 123          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.183e-22
Identity = 62/123 (50.41%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  151 HGKRPLPLEASPEEKEKEQDNN-FPAWTTH-ESDMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGT---RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            +GKRP       E +E+E+D N FP ++   + DM  MVSALTQVIG                  S  NP           +     RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET
Sbjct:    2 YGKRPF---GGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSIDDNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 121          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.593e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 70          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.295e-15
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  154 GKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGXXXXXXXXXXXXXXVKEESSDNPLXXXXXXXXXXEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            GKRPL  E+    +E++++    + T  ESD+S  VS LT                  + ++SS   L            +R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTF+T
Sbjct:    4 GKRPLSPESMAGNREEKKELCCCS-TLSESDVSDFVSELT-----------GQPIPSSIDDQSSSLTLQEK-------SNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDT 101          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 46/108 (42.59%), Postives = 54/108 (50.00%), Query Frame = 1
Query:  247 MSAMVSALTQVIGXXXXXXXXXXXXXX---------------------VKEESSDNPLXXXXXXXXXXEGT-RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            MSAMVSALTQV+                                     + +SS NP+          E   ++R YRGVRQRPWGKWAAEIRDP +AARVWLGTF+T
Sbjct:    1 MSAMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDT 108          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R + YRGVRQRPWGKWAAEIRDP KA RVWLGTFET
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFET 92          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1
Query:  400 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFE 501
            RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+
Sbjct:  182 RRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFD 215          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R+  YRG+RQRPWGKWAAEIRDP++ AR+WLGTF+T
Sbjct:  121 RKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKT 156          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R+  YRG+RQRPWGKWAAEIRDP+K +R WLGTF+T
Sbjct:  124 RKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDT 159          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T
Sbjct:   46 RKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKT 81          
The following BLAST results are available for this feature:
BLAST of CX292065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF115_ARATH9.894e-2451.67Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH3.183e-2250.41Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH7.593e-16100.00Ethylene-responsive transcription factor ERF113 OS... [more]
EF112_ARATH1.295e-1543.59Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH4.166e-1442.59Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH1.750e-1286.11Ethylene-responsive transcription factor RAP2-6 OS... [more]
ABR1_ARATH1.750e-1291.18Ethylene-responsive transcription factor ABR1 OS=A... [more]
RA212_ARATH5.093e-1275.00Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.135e-1175.00Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF71_ARATH1.482e-1177.78Ethylene-responsive transcription factor ERF071 OS... [more]

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Properties
Property NameValue
Genbank descriptionC04010B02SK FlavFr1 Citrus clementina cDNA clone C04010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292065 ID=CX292065; Name=CX292065; organism=Citrus clementina; type=EST; length=506bp
AACTTCCATGTCTACAGGTCTGTTAACAAAACCAAACAAAACAATTACTT
TTTCCGTTGTATGTAATAAAATCCAATAAAAAAATTATTGCATTACATTA
GAGTTTATAGAAGTGCTTATTGTAACTGCAAAAAAGTGGATCATCGAAGG
CATGGAAAGCGGCCACTTCCACTGGAAGCATCACCGGAGGAGAAAGAGAA
AGAACAAGACAACAACTTCCCTGCTTGGACTACTCATGAATCAGACATGT
CTGCCATGGTTTCCGCTCTTACACAAGTAATTGGCACCACTACCACCGAC
GCCGACGCCGACCCCTCGCCGGCAGCCGTTAAAGAAGAATCCTCCGATAA
CCCACTTCAACAAACTCAAACTCAAGATCAAGATCAAGAAGGTACAAGGA
GGAGACATTACAGAGGAGTAAGACAAAGACCTTGGGGCAAATGGGCAGCC
GAAATTAGAGACCCTAAAAAGGCAGCACGAGTATGGCTAGGTACATTTGA
GACTGC
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